View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_113 (Length: 327)
Name: NF10261A_low_113
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_113 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 34444329 - 34444044
Alignment:
| Q |
17 |
tccatactatcattctcattccctggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttgaagaagtgt |
116 |
Q |
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|||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444329 |
tccaaactaacattctcattccttggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttgaagaagtgt |
34444230 |
T |
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| Q |
117 |
ttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatgtcccatct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444229 |
ttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatgtcccatct |
34444130 |
T |
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| Q |
217 |
tttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
302 |
Q |
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| T |
34444129 |
tttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
34444044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 34437590 - 34437297
Alignment:
| Q |
9 |
aagaatattccatactatcattctcattccctggtgtagcagcattgctaataacttcaaacggtgctttatagccatctccactaacatcaatttttga |
108 |
Q |
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||||| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
34437590 |
aagaaaattccaaactatcattctcattccttggtgtagcagcattcctaataacttcaaatggtggtttatagccatctccactaacatctatttttga |
34437491 |
T |
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| Q |
109 |
agaagtgtttatagatttccatgaagaggaattcaaaggaaaccaaattctatcgtaaacatcgtcttgatatctaccacttccattaaatgaaccaatg |
208 |
Q |
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||||||| |||||||||||||||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34437490 |
agaagtgcttatagatttccatgaagaggatttaagaggaaaccaaattctatcataaacatcatcttgatatctaccacttccattaaatgaaccaatg |
34437391 |
T |
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| Q |
209 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccgaactcagttttataaatagaactatcaactggtctaagttccaacgcggagataa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| || ||||||| |
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| T |
34437390 |
tcccatcttttgaaaagtaacaatgaagcagaatcaccaaactcagttttataaatagagttatcaattggtctaagttccaatgctgagataa |
34437297 |
T |
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