View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_116 (Length: 321)

Name: NF10261A_low_116
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_116
NF10261A_low_116
[»] chr4 (4 HSPs)
chr4 (7-312)||(15559753-15560045)
chr4 (236-312)||(15560106-15560182)
chr4 (205-240)||(15561993-15562028)
chr4 (90-122)||(15561953-15561985)
[»] chr6 (6 HSPs)
chr6 (7-75)||(35000925-35000996)
chr6 (164-211)||(35000268-35000315)
chr6 (7-75)||(35047290-35047361)
chr6 (236-312)||(34988919-34988995)
chr6 (86-148)||(35000354-35000417)
chr6 (236-312)||(35042481-35042557)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 15560045 - 15559753
Alignment:
Q  7 aattcccaactcatttttcttacctttcttatgtttgtaggtg---aagtttttacttccatgcttcaacttgtattgttatataaaagagaggaattct 103  Q
    ||||||||||||||||||||||||||    |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15560045 aattcccaactcatttttcttacctt----atgtttgtaggtggtgaagtttttacttccatgcttcaacttgtattgttatataaaagagaggaattct 15559950  T
Q  104 cttacctaatgaagaattcaaaggtaatgggcatgaccatttgctatctgcacgtcactgttggtttcaatgcgatgcaatttgtattgttttgttccat 203  Q
    |||||||| ||||||||||||||| |||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15559949 cttacctactgaagaattcaaaggaaatgggc------------tatctgcacgtcactgttggtttcaatgcgatgcaatttgtattgttttgttccat 15559862  T
Q  204 ggaatggatcttagtgtctatgagaaagtggttgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15559861 ggaatggatcttagtgtctatgagaaagtggttgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggt 15559762  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 15560106 - 15560182
Alignment:
Q  236 tgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggttatattctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15560106 tgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggttatgttctt 15560182  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 15561993 - 15562028
Alignment:
Q  205 gaatggatcttagtgtctatgagaaagtggttgcaa 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  15561993 gaatggatcttagtgtctatgagaaagtggttgcaa 15562028  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 15561985 - 15561953
Alignment:
Q  90 aagagaggaattctcttacctaatgaagaattc 122  Q
    |||||||||||||||||||||| ||||||||||    
T  15561985 aagagaggaattctcttacctactgaagaattc 15561953  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 35000996 - 35000925
Alignment:
Q  7 aattcccaactcatttttcttacctttcttatgtttgta---ggtgaagtttttacttccatgcttcaactt 75  Q
    ||||| ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||    
T  35000996 aattcacaactcattcttcttacctttcttatgttagtaggtggtgaagtttttacttccatgcttcaactt 35000925  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 35000315 - 35000268
Alignment:
Q  164 ttggtttcaatgcgatgcaatttgtattgttttgttccatggaatgga 211  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  35000315 ttggtttcaatgtgatacaatttgtattgttttgttccatggaatgga 35000268  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 35047361 - 35047290
Alignment:
Q  7 aattcccaactcatttttcttacctttcttatgtttgtaggtg---aagtttttacttccatgcttcaactt 75  Q
    ||||||||||| ||| ||||||| ||||||||||| || ||||   ||||||||||||||||||||||||||    
T  35047361 aattcccaacttattcttcttacttttcttatgttagttggtggtgaagtttttacttccatgcttcaactt 35047290  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 34988995 - 34988919
Alignment:
Q  236 tgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggttatattctt 312  Q
    |||||||||||||||||||||||||| || | ||||||| || | ||||||| ||||||||| ||||| || |||||    
T  34988995 tgcaaagattcatggattggattttctggtaggtggagtgcaaaagggaagtttatccttattttggtaatgttctt 34988919  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 35000417 - 35000354
Alignment:
Q  86 ataaaagagaggaattctcttacctaatgaagaattcaaaggtaatggg-catgaccatttgct 148  Q
    ||||||||||||||||||||||| |  ||||||||||||||| ||||||  |||||||||||||    
T  35000417 ataaaagagaggaattctcttacttgttgaagaattcaaaggaaatgggttatgaccatttgct 35000354  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 35042557 - 35042481
Alignment:
Q  236 tgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggttatattctt 312  Q
    |||| ||||||||||||||||||||| || |  ||||||||||| ||||||  ||| ||||| ||||| || |||||    
T  35042557 tgcagagattcatggattggattttcaggtagatggagtacagaagggaagcttattcttatcttggtaatgttctt 35042481  T

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