View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_12 (Length: 465)

Name: NF10261A_low_12
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_12
NF10261A_low_12
[»] chr5 (4 HSPs)
chr5 (25-279)||(27639396-27639650)
chr5 (285-353)||(27639261-27639329)
chr5 (133-222)||(3465307-3465396)
chr5 (131-212)||(41650524-41650605)
[»] chr4 (9 HSPs)
chr4 (62-261)||(19469578-19469776)
chr4 (130-261)||(45068090-45068221)
chr4 (62-231)||(50655070-50655239)
chr4 (151-229)||(4866798-4866876)
chr4 (132-220)||(23012347-23012435)
chr4 (130-218)||(30251406-30251494)
chr4 (151-222)||(44616665-44616736)
chr4 (130-222)||(24065104-24065196)
chr4 (132-193)||(48309656-48309717)
[»] chr6 (2 HSPs)
chr6 (62-222)||(51924-52084)
chr6 (62-258)||(9557337-9557533)
[»] chr2 (3 HSPs)
chr2 (64-220)||(43411446-43411602)
chr2 (132-193)||(10994432-10994493)
chr2 (129-220)||(41074569-41074659)
[»] chr1 (8 HSPs)
chr1 (133-220)||(13297595-13297682)
chr1 (108-222)||(52372646-52372760)
chr1 (130-231)||(44503950-44504051)
chr1 (130-218)||(21926617-21926704)
chr1 (133-252)||(9644372-9644491)
chr1 (130-252)||(40799649-40799771)
chr1 (130-220)||(25410579-25410669)
chr1 (132-193)||(51871203-51871264)
[»] chr7 (4 HSPs)
chr7 (130-220)||(40188193-40188283)
chr7 (62-192)||(46028474-46028604)
chr7 (130-220)||(23176908-23176998)
chr7 (133-220)||(12258376-12258463)
[»] chr3 (7 HSPs)
chr3 (108-217)||(26982040-26982149)
chr3 (130-220)||(34213146-34213236)
chr3 (132-196)||(1045402-1045466)
chr3 (132-190)||(2833336-2833394)
chr3 (138-178)||(1762040-1762080)
chr3 (130-220)||(4778030-4778120)
chr3 (132-220)||(41640824-41640912)
[»] chr8 (8 HSPs)
chr8 (132-220)||(24604837-24604925)
chr8 (130-222)||(34152023-34152115)
chr8 (130-231)||(42032731-42032832)
chr8 (130-222)||(7656805-7656897)
chr8 (133-222)||(42241233-42241322)
chr8 (130-178)||(41927018-41927066)
chr8 (151-262)||(32073896-32074007)
chr8 (132-193)||(36650463-36650524)
[»] scaffold0329 (1 HSPs)
scaffold0329 (131-222)||(18430-18521)
[»] scaffold0042 (1 HSPs)
scaffold0042 (133-201)||(83243-83311)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 27639650 - 27639396
Alignment:
Q  25 aagatgtgtcatctggacttatgtttgagtctaaacatgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgg 124  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||     
T  27639650 aagatgtgtcatctgaacttatgtttgagtctaaacatgttatttggaccatctggacttacataaatgactttatgtttgctggtggcacccatagtga 27639551  T
Q  125 gcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaactt 224  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      
T  27639550 gcagactgtggtggatagagcaaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtaggaggtgcaaccc 27639451  T
Q  225 gtcctttacaggaattggtagggttttgtggtggtggcctaccttggttcgcgcg 279  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||||||| ||||    
T  27639450 gtcctttactgaaattagtagggttttgtggtggtggcctaccttggttcacgcg 27639396  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 27639329 - 27639261
Alignment:
Q  285 tgggttctctcttggccttcctcctttggtggcaggtgttttgtgctctttttggtggatctgtgctcc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27639329 tgggttctctcttggccttcctcctttggtggcaggtgttttgcgctctttttggtggatctgtgctcc 27639261  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 3465396 - 3465307
Alignment:
Q  133 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    ||||||||||||| ||| |||||||||||||||| ||| |||| ||  || || ||||||| |||||||| |||||||||||||||||||    
T  3465396 tggtggatagagcgaaactcttagcttggaagtgtttcttggcgaagcgttctactagttcctgcacttaccatgagtgggaggtgcaac 3465307  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 41650524 - 41650605
Alignment:
Q  131 tgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgg 212  Q
    ||||||||||||||| ||| |||||||||||||||||||| ||||||| ||  ||||||| || |||||||| |||||||||    
T  41650524 tgtggtggatagagcgaaactcttagcttggaagtggttcctggctaagtgctctgctagctcctgcacttaccatgagtgg 41650605  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 261
Target Start/End: Original strand, 19469578 - 19469776
Alignment:
Q  62 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 161  Q
    |||||||||||||||||| |||| |  ||||||| || | ||||| |||||| |||||  || | ||  ||||||||||||||| || ||||||||||||    
T  19469578 tgttatttggaccatctgaacttcctggaatgacattttatttgctggtggcgcccattctgaggagcatgtggtggatagagcaaagttcttagcttgg 19469677  T
Q  162 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttttgtggtggtgg 261  Q
    ||||||||| | | ||| |||| ||||||||| |||||||||||||||||||||||| | | ||||||||   || || |||||| ||||||||||||||    
T  19469678 aagtggttcctagttaagtgtc-tgctagttcctgcacttatcatgagtgggaggtgtagcctgtcctttgttggcatcggtaggattttgtggtggtgg 19469776  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 130 - 261
Target Start/End: Complemental strand, 45068221 - 45068090
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 229  Q
    |||| ||||||||||||||| |||||||||||||||||||| ||||||| || ||||  ||||| | ||||||||||||| ||||||||||||  |||||    
T  45068221 ctgtagtggatagagctaaactcttagcttggaagtggttcctggctaagtgccctggcagttcctacacttatcatgagggggaggtgcaacccgtcct 45068122  T
Q  230 ttacaggaattggtagggttttgtggtggtgg 261  Q
    ||   || ||  ||||||||||||||||||||    
T  45068121 ttgttggtatcagtagggttttgtggtggtgg 45068090  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 50655239 - 50655070
Alignment:
Q  62 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 161  Q
    ||||||||||||||||||||| | |   |||||| |||| ||| | |||||| |||  || | | || ||||| |||||   |||||| |||||||||||    
T  50655239 tgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggcgccctcagagaggagtctgtgatggatcaggctaaactcttagcttgg 50655140  T
Q  162 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtccttt 231  Q
    ||||||||| ||||||| ||||||||||||||||||  ||  ||||||||||||||||||| ||||||||    
T  50655139 aagtggttcctggctaagtgtcctgctagttcttgctttttccatgagtgggaggtgcaacctgtccttt 50655070  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 4866798 - 4866876
Alignment:
Q  151 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 229  Q
    |||||||||||||||||||| ||||||| || | ||||||| |||||||||||||||||||||||||||||| ||||||    
T  4866798 tcttagcttggaagtggttcctggctaagtgccttgctagtccttgcacttatcatgagtgggaggtgcaacctgtcct 4866876  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 23012435 - 23012347
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    |||||||||||||  ||| |||||| |||||| |||||||||||||| |||  ||||||||  |||||||||||||| |||||||||||    
T  23012435 gtggtggatagagtgaaactcttagtttggaattggttcatggctaagtgttgtgctagtttctgcacttatcatgaatgggaggtgca 23012347  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 30251494 - 30251406
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtg 218  Q
    |||||||||||||||  ||| |||| ||||| ||||||||| ||||||| || ||||  ||||||||| ||  ||||||||||||||||    
T  30251494 ctgtggtggatagagtgaaactcttggcttgaaagtggttcctggctaagtgccctggaagttcttgctctgttcatgagtgggaggtg 30251406  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 44616736 - 44616665
Alignment:
Q  151 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    |||||||||| |||||| ||||||||||  | | ||||| ||||||||||||  ||||||||||||||||||    
T  44616736 tcttagcttgtaagtggctcatggctaagggccttgctaattcttgcacttacgatgagtgggaggtgcaac 44616665  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 24065196 - 24065104
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    |||||||||||||||  ||| ||||| | |||||||||||||||||||| |  ||||||||||| ||   |||| |||| |||||||| ||||    
T  24065196 ctgtggtggatagagtgaaactcttaacctggaagtggttcatggctaagtaccctgctagttcctgttgttattatgaatgggaggtacaac 24065104  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 48309717 - 48309656
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 193  Q
    |||||||||||||  ||| ||||||||||||||| ||||  |||||| | ||||||||||||    
T  48309717 gtggtggatagagtgaaactcttagcttggaagtcgttccgggctaagtttcctgctagttc 48309656  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 51924 - 52084
Alignment:
Q  62 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 161  Q
    ||||||||||||||||||||| | |   |||||| |||| ||| | |||||| |||  || | | || || |||||||| |||||||| |||||||||||    
T  51924 tgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggctccctcagagaggagcctatggtggatcgagctaaactcttagcttgg 52023  T
Q  162 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    ||||||||| ||||||| |||| |||||||||||||||||   ||||||||||||||||||    
T  52024 aagtggttcctggctaagtgtcttgctagttcttgcactttatatgagtgggaggtgcaac 52084  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 9557533 - 9557337
Alignment:
Q  62 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 161  Q
    ||||||||||||||||| ||| | |   |||||| |||| | ||| |||||||||||| |||    | | ||||||||| | || |||||||||||||||    
T  9557533 tgttatttggaccatcttgacgtcccgaaatgaccttatttctgctggtggcacccattgtgataggtcggtggtggatggggcaaaattcttagcttgg 9557434  T
Q  162 aagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttttgtggtgg 258  Q
    ||||| ||| || |||| ||||||||||| || |||||||||||||||||||||||||| |  ||||||| | ||  |||||||||||| |||||||    
T  9557433 aagtgattcctgactaagtgtcctgctagctcctgcacttatcatgagtgggaggtgcagcccgtcctttgctggctttggtagggtttggtggtgg 9557337  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 43411446 - 43411602
Alignment:
Q  64 ttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaa 163  Q
    ||||||||||||||||||| | | |||||||| || ||||| | |||||  | | | ||| | || || ||||||||||||| ||| |||||||||| ||    
T  43411446 ttatttggaccatctggacgtcccagaatgaccttgtgttttctggtggtgctcgtggtgtggagtctttggtggatagagcgaaactcttagcttgaaa 43411545  T
Q  164 gtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    ||| ||| ||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  43411546 gtgtttcctggctaagtgtcctgctagctcctgcacttatcatgagtgggaggtgca 43411602  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 10994432 - 10994493
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 193  Q
    ||||||||||||| |||| |||||||||||||||||||| ||||||| || |||||||||||    
T  10994432 gtggtggatagagttaaactcttagcttggaagtggttcctggctaagtgccctgctagttc 10994493  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 41074659 - 41074569
Alignment:
Q  129 actgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    ||||||||||| | ||| ||| |||||||||| ||||||||| ||||||| || ||||||||| ||| ||||| |||||||||| |||||||    
T  41074659 actgtggtggacaaagcgaaactcttagcttgaaagtggttcctggctaagtgccctgctagtcctt-cacttttcatgagtggaaggtgca 41074569  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 13297595 - 13297682
Alignment:
Q  133 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    ||||||||||||  ||| |||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13297595 tggtggatagagtgaaactcttagcttgaaattggttcatggctaagtgtcctgctagttcctgcacttatcatgagtgggaggtgca 13297682  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 52372646 - 52372760
Alignment:
Q  108 ggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatg 207  Q
    |||||| ||||||||| |  | |||||||||||||||| ||| ||||||||| |||||||||| ||||||  || ||||||||||| ||| ||| | |||    
T  52372646 ggtggcgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttagaagtggttcctggctaggtgccctgctagttcctgctctttttatg 52372745  T
Q  208 agtgggaggtgcaac 222  Q
    |||||||||||||||    
T  52372746 agtgggaggtgcaac 52372760  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 44504051 - 44503950
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 229  Q
    |||||||||||| ||  ||  ||||||||||||||||||||||| |||| |||| || |||||| ||| ||| |||||||||||||||||| || |||||    
T  44504051 ctgtggtggataaagtgaagctcttagcttggaagtggttcatgactaagtgtcgtggtagttcctgctcttttcatgagtgggaggtgcagctcgtcct 44503952  T
Q  230 tt 231  Q
    ||    
T  44503951 tt 44503950  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 21926617 - 21926704
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtg 218  Q
    |||||||||||||||  ||| ||||||| |||||||||||| ||||||| || ||||||||||| ||  ||||||||||||||||||||    
T  21926617 ctgtggtggatagagtgaaactcttagcctggaagtggttc-tggctaagtgccctgctagttcatgttcttatcatgagtgggaggtg 21926704  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 9644372 - 9644491
Alignment:
Q  133 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtccttta 232  Q
    ||||||||||||| ||| |||| | ||||||||||||| | ||||| |||||| ||||||||||| | | |||||| |||||||| || || |||||||     
T  9644372 tggtggatagagcgaaactcttgggttggaagtggttcctagctaagtgtcctactagttcttgctcctttcatgaatgggaggtacatctcgtcctttg 9644471  T
Q  233 caggaattggtagggttttg 252  Q
    | || || ||||||||||||    
T  9644472 ctggcatcggtagggttttg 9644491  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 40799649 - 40799771
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 229  Q
    |||||||||||||||  ||| |||| ||||| |||| |||| | ||||| ||   ||||||||||||| ||| |||||||||||||||||| || |||||    
T  40799649 ctgtggtggatagagtgaaactcttggcttgaaagttgttcctagctaagtgcattgctagttcttgctcttttcatgagtgggaggtgcagctcgtcct 40799748  T
Q  230 ttacaggaattggtagggttttg 252  Q
    || | || || ||||||||||||    
T  40799749 ttgctggcatcggtagggttttg 40799771  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 25410669 - 25410579
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    ||||| |||||||||  ||| |||||||||||||||||||| ||||||| |  | ||||||||| ||| |||   ||||||||||||||||    
T  25410669 ctgtgatggatagagtgaaactcttagcttggaagtggttcctggctaagtaccttgctagttcctgctctttctatgagtgggaggtgca 25410579  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 51871203 - 51871264
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 193  Q
    ||||||||||||  |||| |||||||||||||||||||| || |||| || |||||||||||    
T  51871203 gtggtggatagaattaaactcttagcttggaagtggttcctgactaagtgccctgctagttc 51871264  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 40188283 - 40188193
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    |||||||||||| ||| ||| || ||||||||||||||||| || |||| || |||||||||||||||||||||||||||| |||||||||    
T  40188283 ctgtggtggataaagcaaaactcatagcttggaagtggttcttgcctaagtgccctgctagttcttgcacttatcatgagtaggaggtgca 40188193  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 46028604 - 46028474
Alignment:
Q  62 tgttatttggaccatctggacttacaagaatgactttatgtttgcgggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttgg 161  Q
    |||||||||||||||||| |||| |  ||||||| || | ||| | | |||  ||||||||| |  | |||||||||||||||| ||| |||||||||||    
T  46028604 tgttatttggaccatctgaacttcccggaatgaccttgttttttctgatggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagcttgg 46028505  T
Q  162 aagtggttcatggctaaatgtcctgctagtt 192  Q
    ||||||||| ||||||| |||||||||||||    
T  46028504 aagtggttcctggctaagtgtcctgctagtt 46028474  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 23176998 - 23176908
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    |||||||| ||||||  ||| |||||||||||||| ||||| | || || |||| ||||||||| |||||||||||||||| |||||||||    
T  23176998 ctgtggtgtatagagtgaaactcttagcttggaagcggttccttgccaagtgtcatgctagttcatgcacttatcatgagttggaggtgca 23176908  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 12258376 - 12258463
Alignment:
Q  133 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    |||||||||||| |||| |||||||||| ||||||||| ||||||| |||||||| ||| | ||| ||    ||||||||||||||||    
T  12258376 tggtggatagagttaaactcttagcttgaaagtggttcctggctaagtgtcctgccagtccctgctctctctatgagtgggaggtgca 12258463  T

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Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 26982149 - 26982040
Alignment:
Q  108 ggtggcacccatagtgggcagactgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatg 207  Q
    |||||||||| | ||| | || |||||||||||||||  ||| |||||||||||||||||||| ||||||| || ||||| ||||| ||||| |||||||    
T  26982149 ggtggcacccttcgtgaggagcctgtggtggatagagtaaaactcttagcttggaagtggttcttggctaagtgccctgcaagttcctgcacctatcatg 26982050  T
Q  208 agtgggaggt 217  Q
    ||||||||||    
T  26982049 agtgggaggt 26982040  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 34213146 - 34213236
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    |||| ||||||||||  ||| |||||||||||||||||||||||||||| || | ||||||||| ||||||||||| ||||| ||||||||    
T  34213146 ctgttgtggatagagtgaaactcttagcttggaagtggttcatggctaagtgccatgctagttcatgcacttatcacgagtgtgaggtgca 34213236  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 1045466 - 1045402
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttg 196  Q
    ||||||||||| | |||| ||| |||||||||||||||| ||||||| || ||||||||||||||    
T  1045466 gtggtggatagggttaaactctcagcttggaagtggttcctggctaagtgccctgctagttcttg 1045402  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 2833394 - 2833336
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctag 190  Q
    ||||| |||||||  ||| |||||||||||||||||||||||||||| || ||||||||    
T  2833394 gtggtagatagagtgaaactcttagcttggaagtggttcatggctaagtgccctgctag 2833336  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 1762080 - 1762040
Alignment:
Q  138 gatagagctaaattcttagcttggaagtggttcatggctaa 178  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  1762080 gatagagcgaaactcttagcttggaagtggttcatggctaa 1762040  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 4778030 - 4778120
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    ||||||||||||||| |||| |||||| |||||||||||||  |||||  || ||||||||| | ||| ||    ||||||||||||||||    
T  4778030 ctgtggtggatagagttaaactcttagtttggaagtggttccaggctaggtgccctgctagtccctgctctctctatgagtgggaggtgca 4778120  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 41640824 - 41640912
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    |||||||| |||| |||| ||||| |||||||||||||   |||||| || ||||||||||| ||| ||    ||||||||||||||||    
T  41640824 gtggtggacagagttaaactcttaacttggaagtggtttcgggctaagtgccctgctagttcctgctctccctatgagtgggaggtgca 41640912  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 24604837 - 24604925
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgca 220  Q
    |||||||||||||| ||| |||||| ||| ||||||||| ||||||| || |||||||||| || | ||||||||||||||||||||||    
T  24604837 gtggtggatagagcgaaactcttagattgaaagtggttcttggctaagtggcctgctagttttttctcttatcatgagtgggaggtgca 24604925  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 34152115 - 34152023
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||||||  | |||   ||||| ||||||| ||||||||||||||||||||    
T  34152115 ctgttgtggatagagctaaactcttagcttggaagtggttcctggctaagcgccctagcagttcctgcacttttcatgagtgggaggtgcaac 34152023  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 42032731 - 42032832
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcct 229  Q
    |||||||| ||||||| ||| |||||||||||||||||||| ||||||| || ||||||| ||| ||| | | | ||||||||||||||||||  |||||    
T  42032731 ctgtggtgaatagagcgaaactcttagcttggaagtggttcctggctaagtgccctgctacttcctgctccttttatgagtgggaggtgcaacccgtcct 42032830  T
Q  230 tt 231  Q
    ||    
T  42032831 tt 42032832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 7656897 - 7656805
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    |||||||||||||||  ||| |||||  ||||||||||||| |  |||| |||||| ||| |||||||||||||||| |||| ||||||||||    
T  7656897 ctgtggtggatagagtgaaactcttaatttggaagtggttcctaactaagtgtcctactaattcttgcacttatcattagtgagaggtgcaac 7656805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 42241322 - 42241233
Alignment:
Q  133 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||| ||  |  || ||||||| |||||||| | |||||||||||||||||    
T  42241322 tggtggataaagcgaaactcttagcttggaagtggttcctggcgaagcgctctactagttcctgcacttaccttgagtgggaggtgcaac 42241233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 41927018 - 41927066
Alignment:
Q  130 ctgtggtggatagagctaaattcttagcttggaagtggttcatggctaa 178  Q
    |||||||||||||||| ||  |||||||||||||||||||| |||||||    
T  41927018 ctgtggtggatagagcgaatctcttagcttggaagtggttcctggctaa 41927066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 32074007 - 32073896
Alignment:
Q  151 tcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaacttgtcctttacaggaattggtagggttt 250  Q
    |||||| ||||||||| ||  ||||||| |||||| ||||||| ||| | | | |||||||||||| ||| |  ||||| ||| ||||  ||||||| ||    
T  32074007 tcttagtttggaagtgatttctggctaagtgtcctactagttcctgctccttttatgagtgggaggcgcagcccgtcctgtactggaaccggtagggctt 32073908  T
Q  251 tgtggtggtggc 262  Q
    ||||||||||||    
T  32073907 tgtggtggtggc 32073896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 36650524 - 36650463
Alignment:
Q  132 gtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttc 193  Q
    |||||||| |||| |||| ||||||||||| ||||||||  |||||| |||| |||||||||    
T  36650524 gtggtggacagagttaaactcttagcttgggagtggttccgggctaagtgtcttgctagttc 36650463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 18521 - 18430
Alignment:
Q  131 tgtggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcacttatcatgagtgggaggtgcaac 222  Q
    ||||||||||||||| ||| || ||| ||| ||||| |||  |||||| || ||||||||||| ||||||||||||||||||||||||||||    
T  18521 tgtggtggatagagcgaaactcatagtttgaaagtgattctgggctaagtgccctgctagttcctgcacttatcatgagtgggaggtgcaac 18430  T

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Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 83311 - 83243
Alignment:
Q  133 tggtggatagagctaaattcttagcttggaagtggttcatggctaaatgtcctgctagttcttgcactt 201  Q
    ||||||||| ||  ||| ||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  83311 tggtggataaagtcaaactcttagcttggaagtggttcatgccgaagtgtcctgctagttcttgcactt 83243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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