View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_120 (Length: 319)
Name: NF10261A_low_120
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_120 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
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|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 30049390 - 30049716
Alignment:
| Q |
16 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049390 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
30049489 |
T |
|
| Q |
116 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049490 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
30049589 |
T |
|
| Q |
216 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagc |
292 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30049590 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagc |
30049689 |
T |
|
| Q |
293 |
taagcataggctgagtcattacttagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30049690 |
taagcataggctgagtcattacttagt |
30049716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 7162343 - 7162664
Alignment:
| Q |
16 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7162343 |
atggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaaaaaaggcacttgctagtgccaagttcatggagctaagaagcaa |
7162442 |
T |
|
| Q |
116 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
215 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162443 |
gctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
7162542 |
T |
|
| Q |
216 |
tgtgtaattattttaacttgttttgttagtaagattat-ctgcac---------------------aagttaagtaggtttatgtcatatgacatcagct |
293 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| | ||| |||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
7162543 |
tgtgtaatcattttaacttattttgttagtaaaactatgctgcacaagtaataaggttatctgcacaagttaagcaggtttatgtcatatgacatcagct |
7162642 |
T |
|
| Q |
294 |
aagcataggctgagtcattact |
315 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7162643 |
aagcataggctgagtcattact |
7162664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 150 - 319
Target Start/End: Original strand, 30045121 - 30045313
Alignment:
| Q |
150 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045121 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaaa |
30045220 |
T |
|
| Q |
243 |
------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045221 |
ctatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagt |
30045313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 3945644 - 3945970
Alignment:
| Q |
16 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945644 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
3945743 |
T |
|
| Q |
116 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945744 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
3945843 |
T |
|
| Q |
216 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagc |
292 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3945844 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagc |
3945943 |
T |
|
| Q |
293 |
taagcataggctgagtcattacttagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3945944 |
taagcataggctgagtcattacttagt |
3945970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 148 - 319
Target Start/End: Original strand, 3941377 - 3941571
Alignment:
| Q |
148 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt----- |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941377 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
3941476 |
T |
|
| Q |
243 |
--------------agtaagattatctgcacaagttaagtaggtttatgtc----atatgacatcagctaagcataggctgagtcattacttagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941477 |
aactatgctgcacaagtaagattatctgcacaagttaagtaggtttatgtcatatatatgacatcagctaagcataggctgagtcattacttagt |
3941571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 22365272 - 22365590
Alignment:
| Q |
16 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365272 |
atggagatgtaaaattgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
22365371 |
T |
|
| Q |
116 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
215 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365372 |
gctgggagtattccagataagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
22365471 |
T |
|
| Q |
216 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaag |
296 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22365472 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcataagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcaactaag |
22365571 |
T |
|
| Q |
297 |
cataggctgagtcattact |
315 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22365572 |
cataggctgagtcattact |
22365590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 150 - 315
Target Start/End: Original strand, 22361019 - 22361203
Alignment:
| Q |
150 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgtt------- |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361019 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaag |
22361118 |
T |
|
| Q |
243 |
------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattact |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361119 |
ctatgctgcacaagtaaggttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattact |
22361203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 23397404 - 23397337
Alignment:
| Q |
169 |
aaaacttttctgaatactttattgtttatgttactttattgctta--tgtgtgtaattattttaactt |
234 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||| || |||||||||| |||||||||| |
|
|
| T |
23397404 |
aaaacttttctgaatatttcgttgttaatgttactttattgcctatgtgtgtgtaatgattttaactt |
23397337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 39949786 - 39949470
Alignment:
| Q |
16 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949786 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
39949687 |
T |
|
| Q |
116 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
215 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39949686 |
gctgggagtattccagaaaagttttaaggaggagtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatg |
39949587 |
T |
|
| Q |
216 |
tgtgtaattattttaacttgttttgttagtaagattat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaagca |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39949586 |
tgtgtaattattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaaaca |
39949487 |
T |
|
| Q |
299 |
taggctgagtcattact |
315 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
39949486 |
taggctgagttattact |
39949470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 315
Target Start/End: Complemental strand, 39954045 - 39953862
Alignment:
| Q |
149 |
gtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaag |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954045 |
gtgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaa |
39953946 |
T |
|
| Q |
249 |
attat-ctgca----------------caagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattact |
315 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
39953945 |
actatgctgcacaagtaaggttatctgcaagttaagtaggtttatgtcatatgacatcagctaaacatagactgagttattact |
39953862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 196625 - 196318
Alignment:
| Q |
16 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196625 |
atggagatgtaaaactgcagcactgcagttctgaagaacaattggcagacattttaacaaaagcacttcctagtgccaagttcatggagctaagaagcaa |
196526 |
T |
|
| Q |
116 |
gctgggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatg |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
196525 |
gctaggagtatttcaaaaaagttttaaggaggagtgttgactaattgacctataaaacttttctgaa-----------ttatgttactttattgtttatg |
196437 |
T |
|
| Q |
216 |
tgtgtaattattttaacttgttttgtt-------------------agtaagattatctgcacaagttaagtaggtttatgtcatatgacatcagctaag |
296 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
196436 |
tgtgtaatcattttaacttgttttgttagtaaaactatgctgcacaagtaaggttatctgcacgagttaagtaggtttacgtcatatgacatcagctaag |
196337 |
T |
|
| Q |
297 |
cataggctgagtcattact |
315 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
196336 |
cataggctgagtcattact |
196318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 148 - 315
Target Start/End: Complemental strand, 200872 - 200697
Alignment:
| Q |
148 |
agtgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
200872 |
agtgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaa |
200784 |
T |
|
| Q |
248 |
ga-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcattact |
315 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200783 |
aactatgctgcacaagtaaggttatctgcacaagttaagtaggtttacctcatatgacatcagctaagcataggctgagtcattact |
200697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 150 - 313
Target Start/End: Original strand, 1330569 - 1330751
Alignment:
| Q |
150 |
tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaaga |
249 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1330569 |
tgttgactaattgacctataaaacttgtctgaatactttattgtttatgttactctattgcttatgtgtgtaatcattttaacttgttttgttagtaaaa |
1330668 |
T |
|
| Q |
250 |
-------------------ttatctgcacaagttaagtaggtttatgtcatatgacatcagctaagcataggctgagtcatta |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
1330669 |
ctatactgcacaagtaatgttatctgcacaagttaagtaggtttatgtcatatgacatcagcaaagtataggttgagtcatta |
1330751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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