View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_123 (Length: 317)
Name: NF10261A_low_123
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_123 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 930262 - 929955
Alignment:
| Q |
10 |
atgagacgtcggaactgatcaatgtcgctcgacctccaattgacaataatcttcctttaaaagacgacaatctagacttgaatgaactaattacaggttc |
109 |
Q |
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| T |
930262 |
atgagacgtcggaactgatcaatgtcgctcgacctccaattgacaataatcttcctttaaaagacgacaatctagacttgaatgaactaattacgggttc |
930163 |
T |
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| Q |
110 |
ctaagttaataatcttcttgggtttgcgccaacaggtattcccaagaacttaaagggaattgtaccttatagggcatcaaagaaaagttgttgatgcttt |
209 |
Q |
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| T |
930162 |
ctaagtcaataatcttcttgggtttgcgccaacaggtattcccaagaacttaaagggaattgtaccttatagggcatccaagaaaagttgttgatgcttt |
930063 |
T |
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| Q |
210 |
taccacgaattcgcatatgttcagtgcattcacgttaattttatcataattgacaacaaaacttaatgtcatttcaaagcttcgcaagatacccttattt |
309 |
Q |
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| T |
930062 |
taccacaaattcgcatatgttcagtgcattcacgttaattttatcataattgacaacaaaacttaatgtcatttcaaagcttcgcaagatacccttattt |
929963 |
T |
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| Q |
310 |
catggatg |
317 |
Q |
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| T |
929962 |
catggatg |
929955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 19255944 - 19255817
Alignment:
| Q |
48 |
attgacaataatcttcctttaaaagacgacaatctagacttgaatgaacta-attacaggttcctaagttaataatcttcttgggtttgcgccaacaggt |
146 |
Q |
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| T |
19255944 |
attgacaagaatcttcctttccatgatgacaatctagacttgaatgaaatggattacaggttcctaagttgacaatcttcttggatttgtgcgaacggat |
19255845 |
T |
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| Q |
147 |
attcccaagaacttaaagggaattgtac |
174 |
Q |
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| T |
19255844 |
attcccaagaacttaaaggggattgtac |
19255817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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