View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_126 (Length: 316)

Name: NF10261A_low_126
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_126
NF10261A_low_126
[»] chr1 (4 HSPs)
chr1 (33-188)||(4877259-4877429)
chr1 (33-188)||(4872957-4873129)
chr1 (33-143)||(30189939-30190049)
chr1 (137-188)||(30189876-30189928)
[»] chr8 (4 HSPs)
chr8 (33-188)||(3058315-3058487)
chr8 (33-188)||(3062616-3062788)
chr8 (35-188)||(26082911-26083081)
chr8 (137-185)||(26065168-26065216)
[»] chr6 (1 HSPs)
chr6 (33-188)||(6667972-6668144)
[»] chr4 (2 HSPs)
chr4 (33-188)||(17439412-17439584)
chr4 (33-188)||(17443714-17443886)
[»] chr3 (2 HSPs)
chr3 (78-141)||(28010300-28010363)
chr3 (160-188)||(28013761-28013789)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 4877429 - 4877259
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877429 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4877330  T
Q  133 acattaa---------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    |||||||               |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877329 acattaaaataaaagaaaacaaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4877259  T

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Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 4873129 - 4872957
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873129 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 4873030  T
Q  133 acattaa-----------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    |||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873029 acattaaaataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4872957  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 30190049 - 30189939
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30190049 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttttgcagaggtaacttcaactact 30189950  T
Q  133 acattaaaata 143  Q
    |||||||||||    
T  30189949 acattaaaata 30189939  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 30189928 - 30189876
Alignment:
Q  137 taaaatatcacaaaa-tactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  30189928 taaaatatcacaaaaatactattgtgtacatctgaaagctcaatgtctcaaca 30189876  T

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Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 3058487 - 3058315
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058487 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3058388  T
Q  133 acattaa-----------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    |||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058387 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3058315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 3062788 - 3062616
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062788 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 3062689  T
Q  133 acattaa-----------------aatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    |||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062688 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3062616  T

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Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 26082911 - 26083081
Alignment:
Q  35 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactac 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26082911 gacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactac 26083010  T
Q  135 at-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    ||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083011 attaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 26083081  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 26065168 - 26065216
Alignment:
Q  137 taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctca 185  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  26065168 taaaatatcacaaaatactattgtattaatctgaaatctcaatgtctca 26065216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 6667972 - 6668144
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667972 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 6668071  T
Q  133 acat-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668072 acattaaaataaaagaaaaaataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 6668144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 17439412 - 17439584
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439412 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17439511  T
Q  133 acat-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439512 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 17443714 - 17443886
Alignment:
Q  33 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443714 aggacagcatagtagtctgtcacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactact 17443813  T
Q  133 acat-----------------taaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 188  Q
    ||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443814 acattaaaataaaagaaaacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17443886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 28010300 - 28010363
Alignment:
Q  78 aaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaa 141  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  28010300 aaacacttcaacaagtatgggtcaccatacttatgcagaggtaacttcaacaactatattaaaa 28010363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 188
Target Start/End: Original strand, 28013761 - 28013789
Alignment:
Q  160 tgtacatctgaaatctcaatgtctcaaca 188  Q
    |||||||||||||||||||||||||||||    
T  28013761 tgtacatctgaaatctcaatgtctcaaca 28013789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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