View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_129 (Length: 313)
Name: NF10261A_low_129
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_129 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 313
Target Start/End: Complemental strand, 16550495 - 16550185
Alignment:
| Q |
5 |
agtttggtgttacagggatgtgattgtttgggctatatcatatttttgatgctcaccttacaaatatggaataaatatttttacaaatcttcaatgttgc |
104 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16550495 |
agtttgttgttacagggatgtgattttttgggctatatcatatttttgatgctcacctcacaaatatggaataaatatttttacaaatcttcaatgttgc |
16550396 |
T |
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| Q |
105 |
tttgatgnnnnnnnnn--aagtacatcttttgtattttactattatatgaattctcaattgttttttgaacaaactgaattctcaatctaaactttggaa |
202 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16550395 |
tttgatgttttttttttaaagtacatcttttgtattttactattatatgaattctcaattgttttttgaacaaactgaattctcaatctaaactttggaa |
16550296 |
T |
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| Q |
203 |
atggtttaatttgttaacagagctcacaagcacatctctgccattgctcnnnnnnnttaatgtaattactaacctgattctcgacaagtagtttgatgtt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16550295 |
atggtttaatttgttaacagagctcacaagcacatctctgccattgctcaaaaaaattaaggtaattactaacctgattctcgacaagtagtttgatgtt |
16550196 |
T |
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| Q |
303 |
gagataattga |
313 |
Q |
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||| ||||||| |
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| T |
16550195 |
gaggtaattga |
16550185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 66 - 313
Target Start/End: Original strand, 36248702 - 36248955
Alignment:
| Q |
66 |
aaatatggaataaatatttttacaaatcttcaatgttgctttgatgnnnnnnnnn-------aagtacatcttttgtattttactattatatgaattctc |
158 |
Q |
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| T |
36248702 |
aaatatggaataaatatttttacaaatcttcaatgttgctttgatttttttttttttttttaaagtacatcttt-gtattttactattatatgaattctc |
36248800 |
T |
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| Q |
159 |
aattgttttttgaacaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgctcnnnnnnn |
258 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36248801 |
aattgttttttgaacaaactgaattctaaatctaaactttggaaatggtttaatttgttaacatagctcacaagcacatctctgccattgctcaaaaaaa |
36248900 |
T |
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| Q |
259 |
ttaatgtaattactaacctgattctcgacaagtagtttgatgttgagataattga |
313 |
Q |
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| T |
36248901 |
ttaaggtaattactaacctgattctcgacaagtagtttgatgttgagataattga |
36248955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 36248131 - 36248224
Alignment:
| Q |
157 |
tcaattgttttttgaacaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgct |
250 |
Q |
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| T |
36248131 |
tcaattgttttttgaagaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcgcaagcacatctcttccattgct |
36248224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 23084393 - 23084274
Alignment:
| Q |
131 |
tttgtattttactattatatgaattctcaattgttttttgaacaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcaca |
230 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
23084393 |
tttgtattttactattatctgaattctcaattgttttttgaacaaactgaattctcaatctaaactttgaaaatgatttaatttgttaacagagctcaca |
23084294 |
T |
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| Q |
231 |
agcacatctctgccattgct |
250 |
Q |
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| T |
23084293 |
aacacatctcttccattgct |
23084274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 28942797 - 28942870
Alignment:
| Q |
177 |
ctgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgct |
250 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28942797 |
ctgaattctcaatctaaattttggaaatgatttaatttgttaacagagctcacaagcacatctcttccattgct |
28942870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 7707883 - 7707758
Alignment:
| Q |
66 |
aaatatggaataaatatttttacaaatcttcaatgttgctttgatgnnnnnnnnn--aagtacatcttttgtattttactattatatgaattctcaattg |
163 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| ||||||||||||||| | |||||||||||| |
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| T |
7707883 |
aaatatggaataaatatttttacaaatcttcattgttgttttgatgtttttttttttaaatacatcttt-gtattttactattatctaaattctcaattg |
7707785 |
T |
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| Q |
164 |
ttttttgaacaaactgaattctcaatc |
190 |
Q |
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| T |
7707784 |
ttttttgaacaaactaaattctcaatc |
7707758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 34613750 - 34613815
Alignment:
| Q |
5 |
agtttggtgttacagggatgtgattgtttgggctatatcatat-ttttgatgctcaccttacaaat |
69 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| | |||||| |
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| T |
34613750 |
agtttgttgttacagggatgtgattgtttgggctatatcaaatattttgatgctcacttcacaaat |
34613815 |
T |
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