View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_141 (Length: 301)
Name: NF10261A_low_141
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_141 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 34338128 - 34338415
Alignment:
| Q |
10 |
tgagatggacatcaatataaactgcttattagatgacatggagtttttcaaatatatagcacacatttcctagtttaacgaataacaggctataaacggt |
109 |
Q |
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| T |
34338128 |
tgagatagacatcaatataaactgcttattagatgacatggagtttttcaaatatatagcacacatttcctagtttaacgaataacaggctataaaaggt |
34338227 |
T |
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| Q |
110 |
gtgatgaatgactacagtccattaccagttcaacaataatatcatgtaacataaattttatctgtagtccatactaagctatcggaatgtatgtatataa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338228 |
gtgatgaatgactacagtccattaccagttcaacaataatatcatgtaacataaattttatctgtagtccatactaagctatcggaatgtatgtatataa |
34338327 |
T |
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| Q |
210 |
cttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgctacttgttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34338328 |
cttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgctacttgttc |
34338415 |
T |
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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 9072854 - 9072940
Alignment:
| Q |
204 |
atataacttacattcaaaaatatttgaggcattcttccacccaaatatataactgccattgcccaaccaaagaaggtcccaatgcta |
290 |
Q |
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|||||||||||||||||| | |||||||| | ||||||||||| |||||||||||||||||||||||||| | | || ||||||||| |
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| T |
9072854 |
atataacttacattcaaacaaatttgaggaagtcttccacccatatatataactgccattgcccaaccaaggtaagttccaatgcta |
9072940 |
T |
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