View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_149 (Length: 293)
Name: NF10261A_low_149
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_149 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 23915414 - 23915210
Alignment:
| Q |
19 |
atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac |
118 |
Q |
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| T |
23915414 |
atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac |
23915315 |
T |
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| Q |
119 |
tacattcattgacttattttgactgagtgaagtcctt-nnnnnnnggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttca |
217 |
Q |
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| T |
23915314 |
tacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgcctataaattaagaaccc----taacgtctattctcca |
23915219 |
T |
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| Q |
218 |
ttctcctca |
226 |
Q |
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||||||||| |
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| T |
23915218 |
ttctcctca |
23915210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 23915185 - 23915125
Alignment:
| Q |
228 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
288 |
Q |
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| T |
23915185 |
aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatctttat |
23915125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 23922834 - 23922776
Alignment:
| Q |
228 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatcttt |
286 |
Q |
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| T |
23922834 |
aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatcttt |
23922776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
| Q |
163 |
ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca |
226 |
Q |
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| T |
23922935 |
ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca |
23922872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 23923022 - 23922954
Alignment:
| Q |
77 |
aaaaaaccaagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag |
145 |
Q |
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||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| ||||||| |||| |
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| T |
23923022 |
aaaaaaccaagaatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag |
23922954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 25803278 - 25803226
Alignment:
| Q |
236 |
atggcatcttcaacttatttatccattttgctcaccatttcaatgatctttat |
288 |
Q |
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|||||| ||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgatgtttat |
25803226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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