View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_150 (Length: 293)

Name: NF10261A_low_150
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_150
NF10261A_low_150
[»] chr1 (1 HSPs)
chr1 (14-293)||(34092365-34092644)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 34092365 - 34092644
Alignment:
Q  14 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092365 atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt 34092464  T
Q  114 aatcaaaatatttatttcatctttaacataacatcgnnnnnnnaaaatatctttcaaatttaattaaaacatcaatattggttttnnnnnnntctttaac 213  Q
    ||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||       ||||||||    
T  34092465 aatcaaaatatttatttaatctttaacataacatcgtttttttaaaatatctttcaaatttaattaaaacatcaaaattggttttaaaaaaatctttaac 34092564  T
Q  214 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactaatttataaagtgagatattatatagt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  34092565 aagcctacaataaaagattttttaaattaattataattgctcgttaaaaaactgatttataaagtgagatattttatagt 34092644  T

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