View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_151 (Length: 293)

Name: NF10261A_low_151
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_151
NF10261A_low_151
[»] chr5 (16 HSPs)
chr5 (7-281)||(31362923-31363197)
chr5 (10-281)||(31313170-31313444)
chr5 (10-268)||(31329861-31330122)
chr5 (10-268)||(31378643-31378904)
chr5 (140-268)||(31279511-31279639)
chr5 (146-268)||(31284654-31284776)
chr5 (140-268)||(31332137-31332264)
chr5 (102-241)||(40843311-40843450)
chr5 (102-244)||(31475929-31476071)
chr5 (146-268)||(31368509-31368631)
chr5 (146-267)||(31288424-31288545)
chr5 (140-268)||(31380922-31381049)
chr5 (140-267)||(31317296-31317423)
chr5 (146-260)||(31643912-31644026)
chr5 (146-281)||(31281357-31281492)
chr5 (102-241)||(31407401-31407540)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 31363197 - 31362923
Alignment:
Q  7 gtcattgccaatacaacaaatgttgtattagctatgaacaaatgacttcttgagtgttgccatatccttggaaataaaactaacacgcaaagggcgaaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31363197 gtcattgccaatacaacaaatgttgtattagctatgaacaaatgacttcttgagtgttgccatatccttggaaataaaactaacacgcaaagggcgaaac 31363098  T
Q  107 tgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31363097 tgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagc 31362998  T
Q  207 agcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttggaatagaacacgtgacatatt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31362997 agcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttggaatagaacacgtgacatatt 31362923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 31313444 - 31313170
Alignment:
Q  10 attgccaatacaacaaatgttgtattagctatgaacaaatgacttcttgagtgttgccatatccttgg---aaataaaactaacacgcaaagggcgaaac 106  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||| |||||||    ||||||||||||||||||||||  |||||    
T  31313444 attgccaatacaacaaatgttgtatgagctacgaaccaatgacttcttgggtgttgccaaatccttgcggcaaataaaactaacacgcaaaggatgaaac 31313345  T
Q  107 tgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagc 206  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31313344 tgaaaacagtgtaaagagttatcaccaacatggtccatcctccaaatagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagc 31313245  T
Q  207 agcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttggaatagaacacgtgacatatt 281  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||    
T  31313244 agcaaatcccacaaatctccacacctttggcagcatcatacatctccaaatttggaatagaatatgtgtcatatt 31313170  T

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Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 31330122 - 31329861
Alignment:
Q  10 attgccaatacaacaaatgttgtattagctatgaacaaatgacttcttgagtgttgccatatccttgg---aaataaaactaacacgcaaagggcgaaac 106  Q
    ||||||||||||||| |||||||||  |||  |||| || |||||||||||||||||||||||||||    |||||||| |||||| |||| |  ||| |    
T  31330122 attgccaatacaacatatgttgtatgcgcttggaaccaacgacttcttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagc 31330023  T
Q  107 tgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagc 206  Q
    |||||||||||||||||  ||||   ||||   ||||  |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||    
T  31330022 tgaaaacagtgtaaagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgc 31329923  T
Q  207 agcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttggaatagaa 268  Q
    || |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31329922 agaaaatcccagaaatctccacacctttggctgcatcatccatctccaaatttggaatagaa 31329861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 31378904 - 31378643
Alignment:
Q  10 attgccaatacaacaaatgttgtattagctatgaacaaatgacttcttgagtgttgccatatccttgg---aaataaaactaacacgcaaagggcgaaac 106  Q
    ||||||||||||||| |||||||||  |||  |||| || |||||||||||||||||||||||||||    |||||||| |||||| |||| |  ||| |    
T  31378904 attgccaatacaacatatgttgtatgcgcttggaaccaacgacttcttgagtgttgccatatccttgcggcaaataaaattaacacacaaatgatgaagc 31378805  T
Q  107 tgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagc 206  Q
    |||||||||| || |||  ||||   ||||   ||||  |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| | ||    
T  31378804 tgaaaacagtatagagaattatcttgaacaaattccaatctccaaagagatagttgaaggaagaactgagagcattgcaaagcagtccaacaacagctgc 31378705  T
Q  207 agcaaatcccacaaatctccacacctttggctgcatcatacatctccaaatttggaatagaa 268  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31378704 agcaaatcccagaaatctccacacctttggctgcatcatccatctccaaatttggaatagaa 31378643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 268
Target Start/End: Original strand, 31279511 - 31279639
Alignment:
Q  140 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 239  Q
    ||||| ||||||||||||||||||||||||| || |||||||  || | ||||||| ||||||| | |||||| || |||||||||||||| ||||||||    
T  31279511 tccattctccaaagagatagttgaaggaagagctgagagcataacaaaccagtccaacaacaactgaagcaaagcctacaaatctccacacttttggctg 31279610  T
Q  240 catcatacatctccaaatttggaatagaa 268  Q
    |||||  |||||||| ||||||| |||||    
T  31279611 catcaaccatctccatatttggattagaa 31279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 31284776 - 31284654
Alignment:
Q  146 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 245  Q
    ||||||||||||||||||||||||| ||||||||||  || |||||||||  | ||   | |||||| ||||||||||||||||| ||||||||||||||    
T  31284776 ctccaaagagatagttgaaggaagagcttagagcataacaaagcagtccaatagcagatgaagcaaagcccacaaatctccacacttttggctgcatcat 31284677  T
Q  246 acatctccaaatttggaatagaa 268  Q
     ||||||||  |||||| |||||    
T  31284676 ccatctccatgtttggattagaa 31284654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 268
Target Start/End: Complemental strand, 31332264 - 31332137
Alignment:
Q  140 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 239  Q
    ||||| |||||||||| |||||||||||||| |||| |||||  || ||||||||| |||||   | |||||| || |||||||||||||||||||||      
T  31332264 tccattctccaaagaggtagttgaaggaagagcttaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccacacctttggcaa 31332165  T
Q  240 catcatacatctccaaatttggaatagaa 268  Q
    |||||| ||||||| |||||||| |||||    
T  31332164 catcatccatctcc-aatttggattagaa 31332137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 40843311 - 40843450
Alignment:
Q  102 gaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaaca 201  Q
    ||||||||||||||||||||||  ||||  |||||   ||||   |||||| ||||||||||||||||| ||||||||||  || | ||||||| || ||    
T  40843311 gaaactgaaaacagtgtaaagaattatcttcaacaaattccaatttccaaatagatagttgaaggaagagcttagagcataacaaaccagtccaacagca 40843410  T
Q  202 acagcagcaaatcccacaaatctccacacctttggctgca 241  Q
     | | ||||||||||||||||||||| ||||||| |||||    
T  40843411 gctgaagcaaatcccacaaatctccatacctttgtctgca 40843450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 244
Target Start/End: Original strand, 31475929 - 31476071
Alignment:
Q  102 gaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaaca 201  Q
    ||||||||||||||||||||||  ||||  |||||   ||||   |||||| |||||||| |||||||| ||||||||||  || ||||||||| || ||    
T  31475929 gaaactgaaaacagtgtaaagaattatcttcaacaaattccagtttccaaatagatagttaaaggaagagcttagagcataacaaagcagtccaacagca 31476028  T
Q  202 acagcagcaaatcccacaaatctccacacctttggctgcatca 244  Q
     | | |||||| |||||||||||||| ||||||| ||||||||    
T  31476029 gctgaagcaaagcccacaaatctccatacctttgtctgcatca 31476071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 31368631 - 31368509
Alignment:
Q  146 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 245  Q
    |||||||||||||||| |||||||| |||| ||||| ||| |  |||||| ||| |   | |||||| ||||||||||||||||||||||||  ||||||    
T  31368631 ctccaaagagatagttaaaggaagagcttaaagcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttggcaacatcat 31368532  T
Q  246 acatctccaaatttggaatagaa 268  Q
     ||||||||  |||||| |||||    
T  31368531 ccatctccatgtttggattagaa 31368509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 31288545 - 31288424
Alignment:
Q  146 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 245  Q
    ||||| ||||||| ||||||||||| | |||| |||   ||||||||||| ||||| | | |||||| || |||||||||||||| |||||||||||||     
T  31288545 ctccagagagataattgaaggaagagcatagaccataatagagcagtccaacaacagctgaagcaaagcctacaaatctccacacttttggctgcatcaa 31288446  T
Q  246 acatctccaaatttggaataga 267  Q
     |||||| | ||||||| ||||    
T  31288445 ccatctctatatttggattaga 31288424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 268
Target Start/End: Complemental strand, 31381049 - 31380922
Alignment:
Q  140 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 239  Q
    ||||| |||||||||| || ||||||||||| || | |||||  || ||||||||| |||||   | |||||| || |||||||||||||||||||||      
T  31381049 tccattctccaaagaggtaattgaaggaagagctcaaagcataacaaagcagtccaacaacagatgaagcaaagccaacaaatctccacacctttggcaa 31380950  T
Q  240 catcatacatctccaaatttggaatagaa 268  Q
    |||||| ||||||| |||||||| |||||    
T  31380949 catcatccatctcc-aatttggattagaa 31380922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 267
Target Start/End: Complemental strand, 31317423 - 31317296
Alignment:
Q  140 tccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctg 239  Q
    ||||| |||||||||||||||| |||||||| ||||  |||| ||| |  |||||| ||| |   | |||||| ||||||||||||||||||||||||      
T  31317423 tccattctccaaagagatagttaaaggaagagcttaatgcatagcaaacaagtccaacaagagatgaagcaaagcccacaaatctccacacctttggcaa 31317324  T
Q  240 catcatacatctccaaatttggaataga 267  Q
    |||||| ||||||||  |||||| ||||    
T  31317323 catcatccatctccatgtttggattaga 31317296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 31643912 - 31644026
Alignment:
Q  146 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 245  Q
    ||||||| ||||||||||||||||| || |||||||  || || |||||| ||| |   | |||||| |||||||||||||| |||||||||||||  |     
T  31643912 ctccaaatagatagttgaaggaagagctaagagcataacaaagtagtccaacaatagatgaagcaaagcccacaaatctccatacctttggctgcaagaa 31644011  T
Q  246 acatctccaaatttg 260  Q
     ||||||||||||||    
T  31644012 ccatctccaaatttg 31644026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 281
Target Start/End: Complemental strand, 31281492 - 31281357
Alignment:
Q  146 ctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaacaacagcagcaaatcccacaaatctccacacctttggctgcatcat 245  Q
    ||||||||||||| ||||||||||| |||| |||||  || || ||||||  |||| | | |||||| || ||||| || ||||| || || |||||||     
T  31281492 ctccaaagagataattgaaggaagagcttaaagcataacaaagaagtccaagaacagctgaagcaaagcctacaaacctgcacactttcgggtgcatcaa 31281393  T
Q  246 acatctccaaatttggaatagaacacgtgacatatt 281  Q
     |||||||| ||||||| ||||| ||||| ||||||    
T  31281392 ccatctccatatttggattagaatacgtgtcatatt 31281357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 31407401 - 31407540
Alignment:
Q  102 gaaactgaaaacagtgtaaagagctatcaccaacatggtccatcctccaaagagatagttgaaggaagaacttagagcattgcagagcagtccagcaaca 201  Q
    ||||||||||| ||||||||||  ||||  |||||   ||||   |||||| |||| |||||||||||  || |||||||  ||||||| |||| || ||    
T  31407401 gaaactgaaaagagtgtaaagaaatatcttcaacaaattccaatttccaaatagatggttgaaggaagtgctgagagcataacagagcaatccaacagca 31407500  T
Q  202 acagcagcaaatcccacaaatctccacacctttggctgca 241  Q
     | | |||||| ||||||||||||||||| |||| |||||    
T  31407501 gctgaagcaaagcccacaaatctccacacttttgtctgca 31407540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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