View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_155 (Length: 291)

Name: NF10261A_low_155

Description: NF10261A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10261A_low_155

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 176; E-Value: 7e-95

Query Start/End: Original strand, 73 - 291

Target Start/End: Original strand, 13528727 - 13528946

Alignment:

Q	73	acaagacgttggttttcctttctagaatgatgtgggagtgaagcaaattaggatttatcaaaataggcaattcttaagtagtcaaaggatattaatgaag	172	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	13528727	acaagacgttggttttcctttctagcatgatgcgggagtgaagaaaattatgatttatcaaaataggcaattcttaagtagtcaaaggataataatgaag	13528826	T

Q	173	tgattttgtggtagaatcttaggttgaaaaacattttaaacatttaggacagttaaaca-tttaaagagaatataccaagtaaaatattgaaattaggga	271	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13528827	tgattttgtggtagaatcttgggttgaaaaatattttaaatatttaggacagttaaacattttaaagggaatataccaagtaaaatattgaaattaggga	13528926	T

Q	272	ttattgataaggctaactga	291	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13528927	ttattgataaggctaactga	13528946	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2

Raw Score: 176; E-Value: 7e-95

Query Start/End: Original strand, 73 - 291

Target Start/End: Original strand, 13618266 - 13618485

Alignment:

Q	73	acaagacgttggttttcctttctagaatgatgtgggagtgaagcaaattaggatttatcaaaataggcaattcttaagtagtcaaaggatattaatgaag	172	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	13618266	acaagacgttggttttcctttctagcatgatgcgggagtgaagaaaattatgatttatcaaaataggcaattcttaagtagtcaaaggataataatgaag	13618365	T

Q	173	tgattttgtggtagaatcttaggttgaaaaacattttaaacatttaggacagttaaaca-tttaaagagaatataccaagtaaaatattgaaattaggga	271	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13618366	tgattttgtggtagaatcttgggttgaaaaatattttaaatatttaggacagttaaacattttaaagggaatataccaagtaaaatattgaaattaggga	13618465	T

Q	272	ttattgataaggctaactga	291	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13618466	ttattgataaggctaactga	13618485	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3

Raw Score: 52; E-Value: 7e-21

Query Start/End: Original strand, 14 - 73

Target Start/End: Original strand, 13528596 - 13528655

Alignment:

Q	14	gatggacatcaatgcagtttcttgaagtgcaaggcaagcaaaatgttgcctatatatata	73	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13528596	gatggacatcaatgtagtttcttgaagtgcaaggtaagcaaaatgttgcctatatatata	13528655	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4

Raw Score: 52; E-Value: 7e-21

Query Start/End: Original strand, 14 - 73

Target Start/End: Original strand, 13618131 - 13618190

Alignment:

Q	14	gatggacatcaatgcagtttcttgaagtgcaaggcaagcaaaatgttgcctatatatata	73	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13618131	gatggacatcaatgtagtttcttgaagtgcaaggtaagcaaaatgttgcctatatatata	13618190	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 171 - 208

Target Start/End: Complemental strand, 4187688 - 4187651

Alignment:

Q	171	agtgattttgtggtagaatcttaggttgaaaaacattt	208	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	4187688	agtgatttcgtggtagaatcttgggttgaaaaacattt	4187651	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]