View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_162 (Length: 286)

Name: NF10261A_low_162
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_162
NF10261A_low_162
[»] chr7 (5 HSPs)
chr7 (13-244)||(12546233-12546464)
chr7 (126-207)||(9107298-9107378)
chr7 (118-207)||(13311968-13312056)
chr7 (118-270)||(22567909-22568063)
chr7 (167-211)||(9427962-9428006)
[»] chr1 (10 HSPs)
chr1 (13-100)||(16503278-16503365)
chr1 (13-99)||(24432383-24432469)
chr1 (121-211)||(49820265-49820355)
chr1 (107-204)||(17033706-17033803)
chr1 (113-205)||(50589072-50589164)
chr1 (111-203)||(38544605-38544696)
chr1 (25-99)||(29991240-29991314)
chr1 (111-207)||(19598758-19598854)
chr1 (111-204)||(42374286-42374379)
chr1 (115-207)||(46603510-46603599)
[»] chr6 (5 HSPs)
chr6 (13-99)||(5241575-5241661)
chr6 (111-203)||(33968482-33968574)
chr6 (13-99)||(17451432-17451518)
chr6 (14-99)||(14826155-14826240)
chr6 (111-155)||(13098486-13098530)
[»] chr3 (3 HSPs)
chr3 (13-99)||(53016849-53016935)
chr3 (105-230)||(25594371-25594496)
chr3 (111-178)||(47945828-47945895)
[»] chr2 (8 HSPs)
chr2 (111-271)||(22884930-22885092)
chr2 (111-208)||(33788494-33788591)
chr2 (143-204)||(24308593-24308654)
chr2 (118-209)||(27740104-27740195)
chr2 (111-205)||(25504773-25504867)
chr2 (113-207)||(4472046-4472140)
chr2 (118-207)||(43816319-43816408)
chr2 (118-180)||(3745464-3745526)
[»] chr4 (6 HSPs)
chr4 (111-207)||(12296297-12296393)
chr4 (13-99)||(20669778-20669864)
chr4 (118-207)||(46487400-46487489)
chr4 (111-205)||(21983687-21983780)
chr4 (111-207)||(28966989-28967085)
chr4 (111-180)||(46698674-46698743)
[»] chr8 (2 HSPs)
chr8 (111-203)||(17720573-17720665)
chr8 (111-205)||(15906809-15906903)
[»] scaffold1613 (1 HSPs)
scaffold1613 (111-203)||(884-975)
[»] chr5 (5 HSPs)
chr5 (111-207)||(39184048-39184144)
chr5 (111-205)||(8731040-8731134)
chr5 (125-203)||(24072134-24072212)
chr5 (120-207)||(27713200-27713288)
chr5 (111-209)||(23426455-23426553)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 12546464 - 12546233
Alignment:
Q  13 gttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatgtcgacatgtgatg 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||    
T  12546464 gttagtaaaaagaggagtggaagttgagggaattgacttaaactttgacaaggaagaaaacattatatgtttccaaaagacaacatgtcgagatgtggtg 12546365  T
Q  113 gaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcgacgggc 212  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |     
T  12546364 gaagttgattgatctttagaatagtggctcagcttaggtgatgacgacggagtgtttcatttagaggggtgttattttgggataagtagtggcgacgagt 12546265  T
Q  213 attttggatttcgtttttaattggtttttgta 244  Q
     || |||||||||||||||| |||||||||||    
T  12546264 gttatggatttcgtttttaagtggtttttgta 12546233  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 9107298 - 9107378
Alignment:
Q  126 ctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||||||||||||| ||| ||| |||||||| || || |||||||||||||||||  |||||||||||||||||||||||||    
T  9107298 ctttagaatagtggctcaactttggtgatgaggatgg-gtgtttcatttagaggggagttattttgggatgagtagtggcga 9107378  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 13311968 - 13312056
Alignment:
Q  118 tgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||||||| ||||||||||||  ||||||||||||| || |||| |||||||||||||||||  | |||||||||| || ||||||||||    
T  13311968 tgattgatatttagaatagtgtctcagcttaggtgacgaggacgaagtgtttcatttagaggtgt-ttattttggggtgtgtagtggcga 13312056  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 270
Target Start/End: Complemental strand, 22568063 - 22567909
Alignment:
Q  118 tgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcgacgggcatttt 217  Q
    |||||||||||||||||||||   |||||| ||||| || |||   |||||||||||  |||| ||||||||| ||||||||||||| || |    || |    
T  22568063 tgattgatctttagaatagtgccccagctttggtgacgaggacatggtgtttcattttaaggggtgttatttttggatgagtagtggtgatgctggttat 22567964  T
Q  218 ggatttcgtttttaattggt--ttttgtataagagtctgttttaggtggtgatgt 270  Q
    ||||  ||||||| | ||||  ||| ||  |||||||||||||||||||||||||    
T  22567963 ggataccgtttttcagtggttgtttcgtgaaagagtctgttttaggtggtgatgt 22567909  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 9428006 - 9427962
Alignment:
Q  167 tttcatttagagggatgttattttgggatgagtagtggcgacggg 211  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||||    
T  9428006 tttcatttagagggatgctatttagggatgagtagtgacgacggg 9427962  T

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Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 16503365 - 16503278
Alignment:
Q  13 gttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatgt 100  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16503365 gttagtaaagagaggagtcgaagtagacggaattgacttaaactttgacaaggaagagaacattatatgttcccaaaagacaacatgt 16503278  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 24432469 - 24432383
Alignment:
Q  13 gttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatg 99  Q
    ||||||||| | |||||||||||| |||||||||||   ||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  24432469 gttagtaaataaaggagtggaagtggacggaattgaaacaaaatttgacaaggaagagaacattttatgttcccaaaagacaacatg 24432383  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 49820265 - 49820355
Alignment:
Q  121 ttgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcgacggg 211  Q
    ||||||||||||||||||| ||| |||| |||||||||  |  ||||||||||||||||| || |||||||||||| || |||||||||||    
T  49820265 ttgatctttagaatagtggctcatcttaagtgatgacgtagaggtgtttcatttagaggggtgatattttgggatgtgtggtggcgacggg 49820355  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 204
Target Start/End: Original strand, 17033706 - 17033803
Alignment:
Q  107 gtgatggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtgg 204  Q
    |||||| ||| |||||||||||||||||| ||| ||| ||| |||||||| |||   |||||||||| |||||| |||||||||||||| ||||||||    
T  17033706 gtgatgcaagctgattgatctttagaataatggctcaactttggtgatgaggacatggtgtttcattcagaggggtgttattttgggattagtagtgg 17033803  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 50589164 - 50589072
Alignment:
Q  113 gaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgtta-ttttgggatgagtagtggc 205  Q
    ||||||||||||||||| ||||||| | ||| |||||||||||  |||||||||||||||||||||||  |||| ||||||| |||||||||||    
T  50589164 gaagttgattgatctttggaatagtagctcaacttaggtgatgcagacggagtgtttcatttagaggg-ggttatttttgggttgagtagtggc 50589072  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 38544696 - 38544605
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtg 203  Q
    |||||| |||||||||||||||||||||| |||| || | |||||| | ||| ||||||||||||||||| |||||  |||||||||||||||    
T  38544696 tggaagatgattgatctttagaatagtggctcagttttgctgatgagggcgg-gtgtttcatttagaggggtgttacgttgggatgagtagtg 38544605  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 29991314 - 29991240
Alignment:
Q  25 aggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatg 99  Q
    |||||||||||| ||  | || || ||||||||||| |||||||| |||||||||||||| ||||||| ||||||    
T  29991314 aggagtggaagtagaaaggatcgagttaaactttgataaggaagagaacattatatgttcgcaaaagataacatg 29991240  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 19598758 - 19598854
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacg-gagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||||||||||||||||||||||||  || ||| |||| | ||| ||| |  ||||||||| |||||||||  ||||||||||| |||||||||||||    
T  19598758 tggaagttgattgatctttagaataacggctcaacttatgggat-acggctagagtgtttcttttagaggggggttattttgggttgagtagtggcga 19598854  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 42374286 - 42374379
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtgg 204  Q
    |||||| |||||||||||||||||||||| ||| ||| |||||||| ||||  | ||| | |||| |||| |||||| ||||| | ||||||||    
T  42374286 tggaagctgattgatctttagaatagtggctcaactttggtgatgaggacgaggagttgcttttataggggtgttatcttgggttcagtagtgg 42374379  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 46603510 - 46603599
Alignment:
Q  115 agttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    ||||||||||||| ||||||  ||| ||| ||| |||||| | |||  | ||||| |||||||||| ||||||||||||| ||||||||||||    
T  46603510 agttgattgatctgtagaat--tggctcaactttggtgataaggacataatgttt-atttagaggggtgttattttgggaagagtagtggcga 46603599  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 5241575 - 5241661
Alignment:
Q  13 gttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatg 99  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5241575 gttagtaaagagaggagtggaagtagacgggattgacttaaactttgacaaggaagagaacattatatgttcccaaaagacaacatg 5241661  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 33968574 - 33968482
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtg 203  Q
    |||||| |||||||||||||||||||||| ||| ||| || ||| | |||  |||||||||||||||||| ||||||||||||||||||||||    
T  33968574 tggaagctgattgatctttagaatagtggctcaactttggcgataaggacaaagtgtttcatttagaggggtgttattttgggatgagtagtg 33968482  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 17451518 - 17451432
Alignment:
Q  13 gttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatg 99  Q
    ||||||||| | |||||||||||| |||||||||||   ||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  17451518 gttagtaaataaaggagtggaagtggacggaattgaaacaaaatttgacaaggaagagaacattttatgttcccaaaagacaacatg 17451432  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 14826240 - 14826155
Alignment:
Q  14 ttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatg 99  Q
    |||| ||| ||||| |||| ||| || || |||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  14826240 ttagcaaagagaggggtggtagtagatgggattgacgtaaactttgacaaagaagagaacattatgtgttcccaaaagacaacatg 14826155  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 13098530 - 13098486
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatg 155  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||    
T  13098530 tggaagatgattgatctttagaatagtggctcagcttaggggatg 13098486  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 53016849 - 53016935
Alignment:
Q  13 gttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatg 99  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53016849 gttagtaaagagaggagtggaagtagacgggattgacttaaactttgacaaggaagagaacattatatgttcccaaaagacaacatg 53016935  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 25594496 - 25594371
Alignment:
Q  105 atgtgatggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtgg 204  Q
    ||||| ||||||  ||||||||||||||||||||| ||| ||| || || || ||||||||||| ||||||||||  |||||| ||||||||||||||||    
T  25594496 atgtggtggaagcggattgatctttagaatagtggctcaactttggagacgaggacggagtgttccatttagaggagtgttatcttgggatgagtagtgg 25594397  T
Q  205 cgacgggcattttggatttcgttttt 230  Q
    ||| |||   ||||||| ||||||||    
T  25594396 cgatgggtggtttggatatcgttttt 25594371  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 47945828 - 47945895
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagag 178  Q
    |||||||| |||||||||| ||||||||| |||| ||||| ||||  |  ||||||||||||||||||    
T  47945828 tggaagttaattgatcttttgaatagtggctcagtttaggggatgcagctggagtgtttcatttagag 47945895  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 271
Target Start/End: Complemental strand, 22885092 - 22884930
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcgacgg 210  Q
    ||||||||||||||||| ||||||||||| ||   ||||||||||| ||||| ||||||||||||||||| |||||||||||||  || |||||||||||    
T  22885092 tggaagttgattgatctatagaatagtggctcgttttaggtgatgaggacggtgtgtttcatttagaggggtgttattttgggacaagcagtggcgacgg 22884993  T
Q  211 gcattttggatttcgtttttaattggt--ttttgtataagagtctgttttaggtggtgatgtt 271  Q
    |  || |||||||||||| | | ||||  ||| ||  | ||||||||||||||||||||||||    
T  22884992 gggttatggatttcgtttgtcagtggtcgtttcgtgaaggagtctgttttaggtggtgatgtt 22884930  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 33788591 - 33788494
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcgac 208  Q
    |||||| |||||||||| |||| |||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  33788591 tggaagctgattgatctatagattagtggctcagcttaggtgatgaggacggggtgtttcatttagaggggtgttattttgggacgagtagtggcgac 33788494  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 24308654 - 24308593
Alignment:
Q  143 agcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtgg 204  Q
    |||||||||||||| || | ||||||| |||||||||| |||||||||||||||||||||||    
T  24308654 agcttaggtgatgaggatgaagtgttttatttagaggggtgttattttgggatgagtagtgg 24308593  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 27740104 - 27740195
Alignment:
Q  118 tgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcgacg 209  Q
    |||||||||| | ||||||||| ||| ||||||   ||| |||   ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  27740104 tgattgatctatggaatagtggctcaacttaggcattgaggacaatgtgtttcatttagaggggtgttattctgggatgagtagtggcgacg 27740195  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 25504867 - 25504773
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggc 205  Q
    |||||| | |||||| |||||||||| || ||| ||| |||||||| ||     |||||||||||||||| ||||||||||||||||||||||||    
T  25504867 tggaagctaattgatatttagaatagcggctcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagtggc 25504773  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 4472046 - 4472140
Alignment:
Q  113 gaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||| |||||||||||||||||||||| ||| |||| |||| ||||  || ||  || |||||||||| |||||||||||| ||  |||||||||    
T  4472046 gaagctgattgatctttagaatagtggctcaacttaagtgacgacgtaggggtaatttatttagaggggtgttattttgggttgtctagtggcga 4472140  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 43816408 - 43816319
Alignment:
Q  118 tgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||||||||||||||||||||| || | ||  ||||||| |||   ||||||||||||||||  |||| ||| |||| ||||||||||||    
T  43816408 tgattgatctttagaatagtggctctgttttagtgatgaggacaaggtgtttcatttagaggagtgttttttcgggaggagtagtggcga 43816319  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 3745464 - 3745526
Alignment:
Q  118 tgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagaggg 180  Q
    |||||||||||||||||||||| ||||| | ||||| || |||   |||||||||||||||||    
T  3745464 tgattgatctttagaatagtggctcagcatcggtgacgaggacaaggtgtttcatttagaggg 3745526  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 12296297 - 12296393
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||||| || ||| |||||||| |||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12296297 tggaagctggttgttctttagagtagtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcga 12296393  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 20669778 - 20669864
Alignment:
Q  13 gttagtaaaaagaggagtggaagttgacggaattgacttaaactttgacaaggaagaaaacattatatgttcccaaaagacaacatg 99  Q
    ||||||||| ||||||||  | || ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  20669778 gttagtaaagagaggagtataggtagacgggattgacttaaactttgataaggaagagaacattatatgttcccaaaagacaacatg 20669864  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 46487400 - 46487489
Alignment:
Q  118 tgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    ||||||||||||| |||||||| | || ||||||| ||| ||||||| ||||| ||||||||||| ||||||| ||||||||||||||||    
T  46487400 tgattgatctttataatagtggcttagtttaggtgttgaggacggagcgtttcgtttagagggattttattttaggatgagtagtggcga 46487489  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 21983780 - 21983687
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgac-ggagtgtttcatttagagggatgttattttgggatgagtagtggc 205  Q
    ||||||||||||||||||||||||||||  |||||||||| |||| |||| ||||||||||||||| | ||  ||||||||||| |||||||||||    
T  21983780 tggaagttgattgatctttagaatagtgactcagcttaggggatg-cgactggagtgtttcatttaaaagg-ggttattttgggttgagtagtggc 21983687  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 28966989 - 28967085
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||||| |||||||||| ||||||||||| ||| |||| | || |  |  ||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  28966989 tggaagctgattgatctctagaatagtggctcatcttatgggacgcggctggagtgtttcatttaaagggaggttattttgggctgagtagtggcga 28967085  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 46698743 - 46698674
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagaggg 180  Q
    |||||| ||||| |||||||||||||||| || |||| |||||||| |||   |||||||||||||||||    
T  46698743 tggaagctgattcatctttagaatagtggctcggctttggtgatgaggacaaggtgtttcatttagaggg 46698674  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 17720665 - 17720573
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtg 203  Q
    ||||||||||||||||||||||||||||| |||  ||| ||||||| ||||||||||||||||||||||| | |  ||||||| |||||||||    
T  17720665 tggaagttgattgatctttagaatagtggctcaaattaagtgatgaggacggagtgtttcatttagaggggtttatttttggggtgagtagtg 17720573  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 15906809 - 15906903
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggc 205  Q
    |||||| |||||||| | ||||||||| | ||| |||||||||||| ||| | |||||| |||||||| | ||||||||||||||||||||||||    
T  15906809 tggaagatgattgatttatagaatagtagctcaacttaggtgatgaggacagtgtgttttatttagagaggtgttattttgggatgagtagtggc 15906903  T

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Target: scaffold1613 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 975 - 884
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtg 203  Q
    |||||| |||||||||||||||||||||| |||| || | |||||| | ||| ||||||||||||||||| |||||  |||||||||||||||    
T  975 tggaagatgattgatctttagaatagtggctcagttttgctgatgagggcgg-gtgtttcatttagaggggtgttacgttgggatgagtagtg 884  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 39184144 - 39184048
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcga 207  Q
    |||||| |||||||||||| ||||||||| ||||||| |||| ||| |||   ||| ||| || |||||| |||||||||||||| |||||||||||    
T  39184144 tggaagctgattgatcttttgaatagtggctcagctttggtgttgaggacatggtgattcgttaagaggggtgttattttgggataagtagtggcga 39184048  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 8731040 - 8731134
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggc 205  Q
    |||||| | |||||| |||||||||| || ||| ||| |||||||| ||     |||||||||||||||| ||||||||||||||||||||||||    
T  8731040 tggaagctaattgatatttagaatagcggctcaactttggtgatgaggatatgatgtttcatttagaggggtgttattttgggatgagtagtggc 8731134  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 24072212 - 24072134
Alignment:
Q  125 tctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtg 203  Q
    ||||||||||||||  ||| |||  |||| || || || |||||||||||||||| |||||||||||||||||||||||    
T  24072212 tctttagaatagtgactcaactttcgtgacgaggaaggggtgtttcatttagaggaatgttattttgggatgagtagtg 24072134  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 27713200 - 27713288
Alignment:
Q  120 attgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttaga-gggatgttattttgggatgagtagtggcga 207  Q
    |||||||||||||||||||| ||| |||| | ||||  |  ||||||||||||||||| |||  ||||||||||| |||||||||||||    
T  27713200 attgatctttagaatagtggctcaacttatgggatgcggctggagtgtttcatttagagggggggttattttgggttgagtagtggcga 27713288  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 23426455 - 23426553
Alignment:
Q  111 tggaagttgattgatctttagaatagtggttcagcttaggtgatgacgacggagtgtttcatttagagggatgttattttgggatgagtagtggcgacg 209  Q
    |||||| |||||||||  | |||| |||| |||||||||| | ||  |||   ||||||||||||||||| |||||| | |||||||||||||||||||    
T  23426455 tggaagctgattgatccatggaattgtggctcagcttaggagttgcggacaatgtgtttcatttagagggttgttatctggggatgagtagtggcgacg 23426553  T

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