View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_164 (Length: 285)

Name: NF10261A_low_164
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_164
NF10261A_low_164
[»] chr4 (1 HSPs)
chr4 (8-285)||(35486087-35486364)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 35486087 - 35486364
Alignment:
Q  8 ttggtgttcaaaagagtttgaggaaaactatgtgactaattatcctacacatgtttcatgtttatattatatacaatattattagttataaggggaagca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35486087 ttggtgttcaaaagagtttgaggaaaactatgtgactaattatcctacacatgtttcatgtttatattatatacaatattattagttataaggggaagca 35486186  T
Q  108 atcatctcttaatttagagcagagctgataaacttaatcaccatgcagatgcttaactctcatgtttaattctgatacttgtaatgatttttatagtagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35486187 atcatctcttaatttagagcagagctgataaacttaatcaccatgcagatgcttaactctcatgtttaattctgatacttgtaatgatttttatagtagc 35486286  T
Q  208 tacatgtctgtgtgcatgtggtgcatatcttcgtcattttccacttactattatgtcttgtagaccagggcggttgga 285  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  35486287 tacatgtctgtgtgcatgtggtgcatatcttcgtcatttaccacctactattatgtcttgtagaccagggcggttgga 35486364  T

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