View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_169 (Length: 283)
Name: NF10261A_low_169
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_169 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 274
Target Start/End: Complemental strand, 28447509 - 28447237
Alignment:
| Q |
2 |
cataaattaaaccattatcaataaacttatccaatttatcttcaaaaagtaaacttaatctattttactactttttgccaaatattacttggtgagaaaa |
101 |
Q |
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| T |
28447509 |
cataaattaaaccattatcaataaacttatccaatttatcttcaaaaagtaaacttaatctattttactactttttgccaaatattacttggtgagaaaa |
28447410 |
T |
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| Q |
102 |
caagatcgacagactagaatacaagattaatcctgtccaaaaatagaagagacaagattaatttgtcttggaggaagatgcaaatggatagatataagat |
201 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28447409 |
caagattgacagactagaatacaagattaatcctgtccaaaaatagaagagacaagattaatttgtcttggaggaagatgcaaatggttagatataagat |
28447310 |
T |
|
| Q |
202 |
cagaaacaacaatcaggtattaattatggccgtctcgtcatcatcatacaataaaacgtcagacttgatgtcc |
274 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28447309 |
cagaaacaacaatcaggtattaattatggctgtctcgtcatcatcatacaataaaacgtcagacttaatgtcc |
28447237 |
T |
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