View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_17 (Length: 447)

Name: NF10261A_low_17
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_17
NF10261A_low_17
[»] scaffold0019 (1 HSPs)
scaffold0019 (64-430)||(182760-183126)
[»] chr1 (5 HSPs)
chr1 (64-430)||(23632077-23632439)
chr1 (246-377)||(12786236-12786367)
chr1 (237-377)||(18513783-18513922)
chr1 (340-425)||(91207-91291)
chr1 (292-368)||(52274436-52274511)
[»] scaffold0088 (1 HSPs)
scaffold0088 (237-430)||(35400-35592)
[»] chr2 (4 HSPs)
chr2 (276-368)||(27386910-27387002)
chr2 (246-377)||(16093525-16093654)
chr2 (297-359)||(32623583-32623645)
chr2 (297-377)||(20263668-20263749)
[»] chr4 (5 HSPs)
chr4 (260-377)||(23974136-23974252)
chr4 (297-377)||(19611885-19611965)
chr4 (278-377)||(25126199-25126298)
chr4 (277-359)||(18552294-18552376)
chr4 (277-377)||(11153843-11153940)
[»] chr6 (4 HSPs)
chr6 (225-377)||(9548733-9548883)
chr6 (275-377)||(19892897-19892999)
chr6 (246-374)||(19768997-19769124)
chr6 (309-422)||(15285864-15285976)
[»] chr8 (3 HSPs)
chr8 (193-374)||(17290570-17290751)
chr8 (300-353)||(42147468-42147521)
chr8 (275-365)||(40391402-40391492)
[»] chr3 (8 HSPs)
chr3 (275-377)||(3593101-3593202)
chr3 (277-382)||(6460022-6460127)
chr3 (275-377)||(15777305-15777406)
chr3 (278-368)||(18705496-18705586)
chr3 (283-377)||(9733588-9733682)
chr3 (275-373)||(3262219-3262316)
chr3 (237-377)||(30993200-30993339)
chr3 (224-327)||(18534434-18534535)
[»] scaffold0281 (1 HSPs)
scaffold0281 (240-343)||(1839-1940)
[»] chr7 (4 HSPs)
chr7 (246-377)||(18147568-18147698)
chr7 (270-373)||(11508678-11508781)
chr7 (270-365)||(32945370-32945463)
chr7 (275-368)||(33721260-33721354)
[»] chr5 (2 HSPs)
chr5 (275-374)||(39435924-39436023)
chr5 (246-324)||(39176441-39176519)
[»] scaffold0323 (1 HSPs)
scaffold0323 (224-383)||(16223-16383)


Alignment Details
Target: scaffold0019 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 64 - 430
Target Start/End: Original strand, 182760 - 183126
Alignment:
Q  64 cgaagtgaattgctggaaagtaaatccaaactaagaaaaccaaatgcnnnnnnncttgttttctcaatattcaaaatacacatcataatagttttaattt 163  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  182760 cgaagtgaattgctggaaagtaaattcaaactaagaaaaccaaatgcaaaaaatcttgttttctcaatattcaaaatacacatcataatagttttaattt 182859  T
Q  164 tcagaattaatggacatcacaacataaattcatcaaaagatcatgaaagcaagcaaagatccttcactaccacatgttcatgcaacccatatgctaaata 263  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182860 tcagaattaatggacatcacaagataaattcatcaaaagatcatgaaagcaagcaaagatccttcactaccacatgttcatgcaacccatatgctaaata 182959  T
Q  264 gaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctc 363  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  182960 gaaatttccccccttacctctagtttgcagaatttgatgattttctacggtgaaatctctatctacgttcctctccctatgcctccttgcctcttctctc 183059  T
Q  364 cacaatcctagtttccttttattctctaatcttttctctgatcggtgtaaccctatttttctgatgt 430  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  183060 cacaaccctagtttccttttgttctctaatattttctctgatcggtgtaaccctatttttctaatgt 183126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 64 - 430
Target Start/End: Complemental strand, 23632439 - 23632077
Alignment:
Q  64 cgaagtgaattgctggaaagtaaatccaaactaagaaaaccaaatgcnnnnnnnctt-gttttctcaatattcaaaatacacatcataatagttttaatt 162  Q
    |||||||||||| |||||||||||| ||||| || ||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||    
T  23632439 cgaagtgaattgttggaaagtaaattcaaaccaa-aaaaccaaatgcaaaaataatttgttttctcaatattcaaaatacacatcataatagttttaatt 23632341  T
Q  163 ttcagaattaatggacatcacaacataaattcatcaaaagatcatgaaagcaagcaaagatccttcactaccacatgttcatgcaacccatatgctaaat 262  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  23632340 ttcagaattaatggacatcacaa-ataaattcatcaaaagatcatgaaagcaagcaaagatccttcacacccacgtgttcatgcaacccatatgctaaat 23632242  T
Q  263 agaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctct 362  Q
    ||||||| ||| |||||||||||||||   ||||||||||| || ||||||||||||||||||||||||| ||||   ||||||| ||||||||||||||    
T  23632241 agaaactcccc-ccttacctctagtttttcgaatttgatgagttcctacggtgaaatctctctctacgtttctcttagtatgccttcttgcctcttctct 23632143  T
Q  363 ccacaatcctagtttccttttattctctaatcttttctctgatcggtgtaaccctatttttctgatgt 430  Q
    | |||| |||||||| ||||| ||||||||||||||||||  | | |||||||||| |||||| ||||    
T  23632142 caacaaccctagttttcttttgttctctaatcttttctct--ttgttgtaaccctagttttctaatgt 23632077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 12786236 - 12786367
Alignment:
Q  246 caacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgc 345  Q
    |||||| |||| | |||||| ||| ||| | |||||||||||||| |||||||||||| || ||||||||||||||||||  | |||| |||  ||||||    
T  12786236 caacccttatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctcttcaggttcttctttctatgc 12786335  T
Q  346 ctccttgcctcttctctccacaatcctagttt 377  Q
    | |||||||| |||||||||||| ||||||||    
T  12786336 caccttgccttttctctccacaaccctagttt 12786367  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 18513922 - 18513783
Alignment:
Q  237 atgttcatgcaacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctc 336  Q
    |||||||| |||||| |||| | |||||| ||||||| |||||||| ||||||   ||| |||||||||| ||| | | ||||||||||||| |||| ||    
T  18513922 atgttcatacaacccttatggtgaatagagacttccc-ccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttcttc 18513824  T
Q  337 tcgctatgcctccttgcctcttctctccacaatcctagttt 377  Q
    || |||| |||| | |||||||||||||| || ||||||||    
T  18513823 tcactattcctcttggcctcttctctccataaccctagttt 18513783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 91207 - 91291
Alignment:
Q  340 ctatgcctccttgcctcttctctccacaatcctagtttccttttattctctaatcttttctctgatcggtgtaaccctatttttct 425  Q
    |||||||||||||| |||||||||||||| |||||||| | |||  ||||||||||||||| || | | |||||||||||||||||    
T  91207 ctatgcctccttgc-tcttctctccacaaccctagttttcctttgatctctaatcttttctttgcttgttgtaaccctatttttct 91291  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 52274436 - 52274511
Alignment:
Q  292 agaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaa 368  Q
    |||||||||||| ||| |||||||||||||||||| | |||| |||  |||||||  ||||| | ||||||||||||    
T  52274436 agaatttgatgaatttttacggtgaaatctctctc-aagttcttctttctatgccatcttgctttttctctccacaa 52274511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 237 - 430
Target Start/End: Complemental strand, 35592 - 35400
Alignment:
Q  237 atgttcatgcaacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctc 336  Q
    ||||| || |||||| || ||| |||||| ||| ||| ||||||||||||||||  ||||||||||| || |||||||||||||||||||||||||||||    
T  35592 atgttgatacaacccttacgctgaatagagactcccc-ccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctctacgttcctc 35494  T
Q  337 tcgctatgcctccttgcctcttctctccacaatcctagtttccttttattctctaatcttttctctgatcggtgtaaccctatttttctgatgt 430  Q
    | ||||||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||| | | ||||| ||||||||||| ||||    
T  35493 ttgctatgccttcttgccttttctctccacaaccctagttttcttttgttctctaatcttttttctgtttgttgtaatcctatttttctaatgt 35400  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 276 - 368
Target Start/End: Complemental strand, 27387002 - 27386910
Alignment:
Q  276 cttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaa 368  Q
    ||||||||||||||   ||| || ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  27387002 cttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttcttctcgccatgcctccttgcctcttctctccacaa 27386910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 16093525 - 16093654
Alignment:
Q  246 caacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgc 345  Q
    |||||| |||| | |||||| ||| ||||| |||||||||||||||| || | ||||| ||||||| |||||||||||||||| |||||||||||||| |    
T  16093525 caacccttatggtgaatagagactcccctc-ttacctctagtttgcaaaagt-gatgaatttctacagtgaaatctctctctaggttcctctcgctattc 16093622  T
Q  346 ctccttgcctcttctctccacaatcctagttt 377  Q
     || |||||| ||||||||| || ||||||||    
T  16093623 atctttgccttttctctccataaccctagttt 16093654  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 32623645 - 32623583
Alignment:
Q  297 ttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttc 359  Q
    ||||||||||||||||||||||||||||||||  ||| ||||| ||| |||| ||||||||||    
T  32623645 ttgatgattttctacggtgaaatctctctctagattcttctcgttattcctctttgcctcttc 32623583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 20263749 - 20263668
Alignment:
Q  297 ttgatgattttctacggt-gaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagttt 377  Q
    ||||||| || ||||||| ||||||||||| ||  ||| ||||| | |||||||||| ||||| ||||||||| ||||||||    
T  20263749 ttgatgaattcctacggtagaaatctctctttagattcttctcggtgtgcctccttgactcttttctccacaaccctagttt 20263668  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 377
Target Start/End: Original strand, 23974136 - 23974252
Alignment:
Q  260 aatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttc 359  Q
    |||| ||||| ||| | ||||||||||||||||||||| |||||||| |||||||||||||| |||||| |||| ||||||||| |||| ||| ||||||    
T  23974136 aataaaaactccccccattacctctagtttgcagaatt-gatgatttcctacggtgaaatctttctctaggttcttctcgctattcctctttgtctcttc 23974234  T
Q  360 tctccacaatcctagttt 377  Q
    |||||| || ||||||||    
T  23974235 tctccataaccctagttt 23974252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 377
Target Start/End: Complemental strand, 19611965 - 19611885
Alignment:
Q  297 ttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagttt 377  Q
    |||||||||  ||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||| ||||||||    
T  19611965 ttgatgattccctacgatgaaatctctctctaggttcttctcgctatccctccttgcctcttctccccacaaccctagttt 19611885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 25126298 - 25126199
Alignment:
Q  278 tacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagttt 377  Q
    ||||||||||||   ||| |||||||||| ||||| | |||| |||||||| |||| ||||||||| |||| |||||||||||| ||| || ||||||||    
T  25126298 tacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttcttctcgctattcctctttgcctcttctcaccataaccctagttt 25126199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 18552376 - 18552294
Alignment:
Q  277 ttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttc 359  Q
    |||| |||||||| |  |||||||||| || ||| | |||||| |||||| | |||| |||| ||||||||||||||||||||    
T  18552376 ttacttctagtttactaaatttgatgaattactatgatgaaatatctctccaggttcttctcactatgcctccttgcctcttc 18552294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 377
Target Start/End: Original strand, 11153843 - 11153940
Alignment:
Q  277 ttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagtt 376  Q
    |||||||||||| | |||||||||||| ||  ||||||||||  ||||||||  ||| ||||| | ||||| |||| ||||| ||||||||| |||||||    
T  11153843 ttacctctagttcgaagaatttgatgaattcatacggtgaaa--tctctctagattcttctcggtgtgcct-cttgactcttttctccacaaccctagtt 11153939  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 377
Target Start/End: Original strand, 9548733 - 9548883
Alignment:
Q  225 cttcactaccacatgttcatgcaacccatatgctaaatagaaacttccctccttacctctagttt--gcagaatttgatgattttctacggtgaaatctc 322  Q
    ||||||||||| ||| |||| |||||| |||| | || ||| ||| ||| ||||| |||||||||  || ||| |||||||||| |||||||||||||||    
T  9548733 cttcactaccatatgatcatacaacccttatgatgaacagagactcccc-ccttatctctagtttttgc-gaaattgatgatttcctacggtgaaatctc 9548830  T
Q  323 tctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagttt 377  Q
      ||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  9548831 --tctacgtttttctcgctatgcctccttgtctcttctctccacaaccctagttt 9548883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 19892897 - 19892999
Alignment:
Q  275 ccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctag 374  Q
    |||||||||||||| | |||||||||||| |||||||| |||||| ||||||||  ||| ||||| | ||||| |||| ||||| ||||||||| |||||    
T  19892897 ccttacctctagttcggagaatttgatgaatttctacgatgaaatttctctctagattcttctcggtgtgcctgcttgactcttttctccacaaccctag 19892996  T
Q  375 ttt 377  Q
    |||    
T  19892997 ttt 19892999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 19769124 - 19768997
Alignment:
Q  246 caacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgc 345  Q
    |||||| |||| | |||||| ||| ||| | |||||||||||| | |||||||||||| || |||||||||||||||||||||  ||| ||||| | |||    
T  19769124 caacccttatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctctctagattcttctcggtgtgc 19769025  T
Q  346 ctccttgcctcttctctccacaatcctag 374  Q
    || | || ||||| ||||||||| |||||    
T  19769024 ct-catgactcttttctccacaaccctag 19768997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 422
Target Start/End: Complemental strand, 15285976 - 15285864
Alignment:
Q  309 tacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctag-tttccttttattctctaatcttttctctgatcg 407  Q
    |||||||||||||||||| |  ||| |||| |||||| || |||| ||||||||||||||| |||| ||| |||| | |||||||| |||||| || | |    
T  15285976 tacggtgaaatctctctccagattcttctcactatgcttctttgcgtcttctctccacaatactagattttctttga-tctctaatattttct-tgtttg 15285879  T
Q  408 gtgtaaccctatttt 422  Q
     ||||||||||||||    
T  15285878 ttgtaaccctatttt 15285864  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 193 - 374
Target Start/End: Original strand, 17290570 - 17290751
Alignment:
Q  193 tcatcaaaagatcatgaaagcaagcaaagatccttcactacc-acatgttcatgcaacccatatgctaaatagaaacttccctccttacctctagtttgc 291  Q
    ||||||||| || |||||| ||| |||| | ||||||| ||| | || ||||| |||||| |||| | |||||| ||| ||| ||||||||||| |||      
T  17290570 tcatcaaaaaattatgaaaacaaacaaaaacccttcacaacccatatattcatacaacccttatggtgaatagagactcccc-ccttacctctaattttg 17290668  T
Q  292 agaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctag 374  Q
    |||| ||||| ||||  |||||| ||||||||||||| |||| ||||| ||| |||||||| ||||||||||||||| |||||    
T  17290669 agaaattgataatttcatacggtaaaatctctctctaggttcttctcgttattcctccttgtctcttctctccacaaccctag 17290751  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 42147468 - 42147521
Alignment:
Q  300 atgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgc 353  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||    
T  42147468 atgattttctatggtgaaatctctctctaggttcttctcgctatgccttcttgc 42147521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 365
Target Start/End: Original strand, 40391402 - 40391492
Alignment:
Q  275 ccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctcca 365  Q
    |||||||||||||||   ||| |||||| ||||||| | |||||||||||| || |||| ||||||||| | || ||| ||||||||||||    
T  40391402 ccttacctctagttttgcgaaattgatggttttctaagttgaaatctctctttaggttcttctcgctattcatctttgtctcttctctcca 40391492  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 3593101 - 3593202
Alignment:
Q  275 ccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctag 374  Q
    ||||||||||||||||| ||||| |||||||| |||||| ||||||||||  || |||  ||||||||| |||||||||||||||||||||||| | |||    
T  3593101 ccttacctctagtttgccgaatt-gatgatttcctacggagaaatctctccataggttattctcgctattcctccttgcctcttctctccacaaccttag 3593199  T
Q  375 ttt 377  Q
    |||    
T  3593200 ttt 3593202  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 382
Target Start/End: Original strand, 6460022 - 6460127
Alignment:
Q  277 ttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagtt 376  Q
    ||||||||| ||  |||||||||||||  | ||||| |||||||||||||||  | | ||||| |||||||||||||||||||||||||||| |||| ||    
T  6460022 ttacctctaattaacagaatttgatgaaatcctacgatgaaatctctctctagatccttctcgttatgcctccttgcctcttctctccacaaccctattt 6460121  T
Q  377 tccttt 382  Q
    ||||||    
T  6460122 tccttt 6460127  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 15777406 - 15777305
Alignment:
Q  275 ccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctag 374  Q
    |||||||||||||||||| || | ||| | || ||||||||||||||||||||| |||| ||||||||| |||| |||||| ||||||||| || |||||    
T  15777406 ccttacctctagtttgcaaaagt-gataaattcctacggtgaaatctctctctaggttcttctcgctattcctctttgcctattctctccataaccctag 15777308  T
Q  375 ttt 377  Q
    |||    
T  15777307 ttt 15777305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 368
Target Start/End: Complemental strand, 18705586 - 18705496
Alignment:
Q  278 tacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaa 368  Q
    ||||||||||||   ||| ||||||||||  || |||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||    
T  18705586 tacctctagttttacgaaattgatgatttcatatggtgaaatctctctctacgttcttctcactatgtctccttacctcttctctccacaa 18705496  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 377
Target Start/End: Complemental strand, 9733682 - 9733588
Alignment:
Q  283 ctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagttt 377  Q
    |||||| | |||||||||||| || |||| ||||||||||||||||  ||| ||||| | |||||||||| ||||| ||||||||| ||||||||    
T  9733682 ctagttcgaagaatttgatgaattcctactgtgaaatctctctctagattcttctcggtgtgcctccttgactcttttctccacaaccctagttt 9733588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 373
Target Start/End: Complemental strand, 3262316 - 3262219
Alignment:
Q  275 ccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatccta 373  Q
    |||||||| ||||||  ||||| | ||||||| ||||| |||||||||||||||| |||  |||||||||| | |||| ||||||||||||||| ||||    
T  3262316 ccttacct-tagtttatagaatctaatgatttcctacgatgaaatctctctctacattctcctcgctatgctttcttgtctcttctctccacaacccta 3262219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 30993339 - 30993200
Alignment:
Q  237 atgttcatgcaacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctc 336  Q
    |||||||| |||||| |||| | |||||| ||| ||| |||||||||||||||| |||||||||||| ||  ||| ||||| |||||||| | |||| ||    
T  30993339 atgttcatacaacccttatggtgaatagagactcccc-ccttacctctagtttggagaatttgatgaattcatacagtgaagtctctctccaggttcttc 30993241  T
Q  337 tcgctatgcctccttgcctcttctctccacaatcctagttt 377  Q
    |  ||||| |  ||||  | |||||||||||| ||||||||    
T  30993240 tttctatgtcatcttgttttttctctccacaaccctagttt 30993200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 18534535 - 18534434
Alignment:
Q  224 ccttcactaccacatgttcatgcaacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctct 323  Q
    |||||||||||| |||||||| ||| || |||| | |||||| ||| |||  ||||||||||||||   ||| |||||||||| ||| |||  |||||||    
T  18534535 ccttcactaccatatgttcatacaatccttatggtgaatagagactcccc--cttacctctagttttgcgaaattgatgatttcctatggttgaatctct 18534438  T
Q  324 ctct 327  Q
    ||||    
T  18534437 ctct 18534434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 1839 - 1940
Alignment:
Q  240 ttcatgcaacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcg 339  Q
    ||||| |||||| |||| |||||||| ||| ||| || |||||||||||||||||||| |||||||| |||||||||||||||||| || |||| |||||    
T  1839 ttcatacaacccttatggtaaatagagactcccc-ccatacctctagtttgcagaatt-gatgatttcctacggtgaaatctctctgtaggttcttctcg 1936  T
Q  340 ctat 343  Q
    ||||    
T  1937 ctat 1940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 18147698 - 18147568
Alignment:
Q  246 caacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgc 345  Q
    |||||| |||| | |||||| ||| ||| | |||||||||||| | |||||||||||| || |||||| ||||||||||||||  ||| ||||| | |||    
T  18147698 caacccttatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctctctagattcttctcggtgtgc 18147599  T
Q  346 ctccttgcctcttctctccacaatcctagttt 377  Q
    || |||| ||||| ||||||||| ||||||||    
T  18147598 ct-cttgactcttttctccacaaccctagttt 18147568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 11508781 - 11508678
Alignment:
Q  270 tccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaat 369  Q
    |||| |||||||||||||| | |||||||||||| || |||| || |||||||||||||  ||| ||||| | |||||||||  ||||| |||||||||     
T  11508781 tccccccttacctctagttcggagaatttgatgaattactactgtaaaatctctctctagattcttctcggtttgcctccttaactcttttctccacaac 11508682  T
Q  370 ccta 373  Q
    ||||    
T  11508681 ccta 11508678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 365
Target Start/End: Original strand, 32945370 - 32945463
Alignment:
Q  270 tccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctcca 365  Q
    |||| |||||||||||||||   ||| |||||||||| ||||| |||||  |||||||| |||| ||| ||||| |||| ||||||||||||||||    
T  32945370 tccccccttacctctagttttgcgaaattgatgatttcctacgttgaaa--tctctctaagttcttctggctattcctctttgcctcttctctcca 32945463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 368
Target Start/End: Original strand, 33721260 - 33721354
Alignment:
Q  275 ccttacctctagttt-gcagaatttgatgattttctacggt-gaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaa 368  Q
    ||||| ||||||||| |||||||  ||||| ||||||| || |||||||||||||| |||| |||||||||| ||||||  ||||| |||||||||    
T  33721260 ccttatctctagttttgcagaata-gatgaatttctaccgttgaaatctctctctaggttcttctcgctatgtctccttatctcttttctccacaa 33721354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 39436023 - 39435924
Alignment:
Q  275 ccttacctctagtttgcagaatttgatgattttctacggtgaaatctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctag 374  Q
    |||||||||||||||   ||| |||||||||| |||||||||||||||||| ||  ||| |||  |||||||| ||||| ||||||||||| ||||||||    
T  39436023 ccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctctttagattcttcttactatgccttcttgcatcttctctccaaaatcctag 39435924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 39176441 - 39176519
Alignment:
Q  246 caacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgattttctacggtgaaatctctc 324  Q
    |||||| |||| | |||||| ||||||| | |||||||||||||   ||| |||||||||||||| |||||||||||||    
T  39176441 caacccttatgatgaatagagacttcccccattacctctagttttgcgaaattgatgattttctatggtgaaatctctc 39176519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 383
Target Start/End: Original strand, 16223 - 16383
Alignment:
Q  224 ccttcactacc-acatgttcatgcaacccatatgctaaatagaaacttccctccttacctctagtttgcagaatttgatgat--tttct-acggtgaaat 319  Q
    ||||||||||| ||||| |||| |||||| | || | |||||| ||||||| |||||||||||||||  |||||||||||||  ||||| ||| |  ||     
T  16223 ccttcactacccacatgatcatacaacccttttggtgaatagagacttccc-ccttacctctagtttagagaatttgatgatgatttcttacgatttaaa 16321  T
Q  320 ctctctctacgttcctctcgctatgcctccttgcctcttctctccacaatcctagtttcctttt 383  Q
     |||||||| |||| |||| ||||||||||||| |||||||||||| || |||||||| |||||    
T  16322 -tctctcta-gttcttctcactatgcctccttgtctcttctctccaaaaccctagttttctttt 16383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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