View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_171 (Length: 283)
Name: NF10261A_low_171
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_171 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 20816559 - 20816837
Alignment:
| Q |
1 |
gagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816559 |
gagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacgg |
20816658 |
T |
|
| Q |
101 |
aaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtataga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816659 |
aaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtataga |
20816758 |
T |
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| Q |
201 |
cgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
279 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816759 |
cgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
20816837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 38779586 - 38779308
Alignment:
| Q |
1 |
gagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacgg |
100 |
Q |
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|||||||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||||||| | |
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| T |
38779586 |
gagtctttgttggtgtctccaatatcaaaagctagtgcacaccagaggtctggacgtgctggaagaactcagccggggaaatgctttagactttataccg |
38779487 |
T |
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| Q |
101 |
aaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtataga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |
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| T |
38779486 |
aaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatcttgccaacacagttcttacattgaagaaactgggtataga |
38779387 |
T |
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| Q |
201 |
cgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattacttg |
279 |
Q |
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|||||||| ||||||||||| |||||||||||||| || |||||||| ||||| |||||||||||||||||||||||| |
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| T |
38779386 |
tgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgtgctttggaagtgttgaattacttg |
38779308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 33388545 - 33388268
Alignment:
| Q |
1 |
gagtctttattggtgtctccaatatcaaaggctagtgcggttcagagatctgggcgtgctggaagaacacaaccagggaaatgctttagactttatacgg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |||||||||| |||||| ||||| | |
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| T |
33388545 |
gagtctttgttggtgtctccaatatcaaaggctagtgcacaccagagatcaggtcgtgccggaagaactcaaccggggaaatgctatagactctataccg |
33388446 |
T |
|
| Q |
101 |
aaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatctcgccaacacagttcttactttgaagaaattgggtataga |
200 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| |
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| T |
33388445 |
aaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatctaatcttgcaaacacggttcttacattgaagaaattgggtataga |
33388346 |
T |
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| Q |
201 |
cgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgctttggaagtgttgaattactt |
278 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
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| T |
33388345 |
tgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgtgctttggaagtgttgaattactt |
33388268 |
T |
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