View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_180 (Length: 275)
Name: NF10261A_low_180
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_180 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 36420 - 36164
Alignment:
| Q |
19 |
agtcattgcactacatcttcatatatgaaatgaacattgcccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagctt |
118 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
36420 |
agtcattacactacatcttcatatatgaaatgaacattgcccaaaatacaaccaacataaccataaacaaatttgccttctttcttgagtattggagctt |
36321 |
T |
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| Q |
119 |
cttctttaacttctcatttttgttgattccaaattccttcattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctttgtg |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36320 |
cttctttaacttctcatttttgttgattccgaattccttcattattccagtaatgtctttcaacatctcttcacaattgcaatcacatggaagttttgtg |
36221 |
T |
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| Q |
219 |
acattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatggagga |
275 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |
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| T |
36220 |
acattcgaaggtgatgcttaagctcttcttactactcctggacaaacatatggagga |
36164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 275
Target Start/End: Complemental strand, 23573719 - 23573471
Alignment:
| Q |
27 |
cactacatcttcatatatgaaatgaacattgcccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttcttta |
126 |
Q |
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||||||||| ||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||| |||||||||| |
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| T |
23573719 |
cactacatcgtcagatatgtaatgaacattgcccaagatacaaccaatgtaaacataaacaaatttgccttctttcttgagtattggagtttcttcttta |
23573620 |
T |
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| Q |
127 |
acttctcatttttgttgattccaaattccttcattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcga |
226 |
Q |
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|||| ||||||||||||||||| ||||| || ||||||| |||||||||||||| || |||||||||||||||||||||| |||| ||||| |||| ||| |
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| T |
23573619 |
acttgtcatttttgttgattccgaattcgttgattattccagtaatgtctttcagcagctcttcacaattgcaatcacatcgaagttttgttacatccga |
23573520 |
T |
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| Q |
227 |
aggtgatgcttcaactcttcttactactcctggacgaacatatggagga |
275 |
Q |
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| |||||||||| ||||||||||| |||||||||||||||||| |||| |
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| T |
23573519 |
tgatgatgcttcagctcttcttactcctcctggacgaacatatgcagga |
23573471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 214
Target Start/End: Original strand, 31814943 - 31815098
Alignment:
| Q |
59 |
ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttc |
158 |
Q |
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|||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || |||| | || ||| |
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| T |
31814943 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcgttcccagatctttc |
31815042 |
T |
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| Q |
159 |
attattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
214 |
Q |
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| || ||| | ||||||| || | |||||||||||||||||||||||||||| |
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| T |
31815043 |
aacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt |
31815098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 71 - 275
Target Start/End: Original strand, 13507638 - 13507842
Alignment:
| Q |
71 |
caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagta |
170 |
Q |
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||||| || ||||||||||||||||| ||| ||||| ||||||||||||||||||| |||||| |||||||| |||| || ||||||||||||| |||| |
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| T |
13507638 |
caacaaaatcataaacaaatttgccttcttccttgagtattggagcttcttctttagcttctcgtttttgtttattctgaaatccttcattattccagta |
13507737 |
T |
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| Q |
171 |
atgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatg |
270 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||||||||| |
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| T |
13507738 |
atgtttttcggcatctcttcacaattgcaatcacatggaagctttgtgacagtcaaaggtgatgcttcaactcttcttaccgctactggacgaacatata |
13507837 |
T |
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| Q |
271 |
gagga |
275 |
Q |
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||||| |
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| T |
13507838 |
gagga |
13507842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 71 - 275
Target Start/End: Complemental strand, 13507611 - 13507407
Alignment:
| Q |
71 |
caacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttcattattctagta |
170 |
Q |
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||||| |||||||||||||||||| | ||| ||||| |||| ||||||||||||||||||||| |||||||||||| || |||||||||||| |||| |
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| T |
13507611 |
caacaaaaccataaacaaatttgcattcttccttgagtattagagcttcttctttaacttctcgtttttgttgattttgaaatccttcattatttgagta |
13507512 |
T |
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| Q |
171 |
atgtctttcaacatctcttcacaattgcaatcacatggaagctttgtgacattcgaaggtgatgcttcaactcttcttactactcctggacgaacatatg |
270 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||| || || |||||||||| | |
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| T |
13507511 |
atgtctttcagcatctcttcacaattgcaatcacgtggaagctttgtgaccgtcgaaggtgatgcttcagctattcttaccgctactagacgaacatacg |
13507412 |
T |
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| Q |
271 |
gagga |
275 |
Q |
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||||| |
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| T |
13507411 |
gagga |
13507407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 7799387 - 7799543
Alignment:
| Q |
58 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
157 |
Q |
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|
||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||||||||| |||||||| || || || |
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| T |
7799387 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcatttttcttgattcccaaatcttt |
7799486 |
T |
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| Q |
158 |
cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
214 |
Q |
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|| ||| ||| | ||||||| || | |||||||||||||||||||||||||||| |
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| T |
7799487 |
caatatcacagtcaaatctttcatcaccacttcacaattgcaatcacatggaagctt |
7799543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 19398488 - 19398644
Alignment:
| Q |
58 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
157 |
Q |
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||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| || ||||||||||| |||||||| || || || |
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| T |
19398488 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaaattctcatttttcttgattcccaaatcttt |
19398587 |
T |
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| Q |
158 |
cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
214 |
Q |
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|| ||| ||| | ||||||| || | |||||||||||||||||||||||||||| |
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| T |
19398588 |
caatatcacagttaaatctttcatcaccacttcacaattgcaatcacatggaagctt |
19398644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 3429 - 3585
Alignment:
| Q |
58 |
cccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattcctt |
157 |
Q |
| |
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||||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| | || || |
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| T |
3429 |
cccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcccagatcttt |
3528 |
T |
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| Q |
158 |
cattattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
214 |
Q |
| |
|
|| || ||| | ||||||| || | |||||||||||||||||||||||||||| |
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| T |
3529 |
caacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt |
3585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 214
Target Start/End: Original strand, 22059336 - 22059491
Alignment:
| Q |
59 |
ccaagatacaaccaacagaaccataaacaaatttgcctgctttcttgaatattggagcttcttctttaacttctcatttttgttgattccaaattccttc |
158 |
Q |
| |
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|||||| |||| ||||| |||||||||||| || | || ||| ||||||| ||| ||||||||||| |||||||| ||||| || ||||| | || ||| |
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| T |
22059336 |
ccaagaaacaatcaacaaaaccataaacaagttcgtcttcttccttgaatgttgtagcttcttcttcaacttctcgtttttcttcattcccagatctttc |
22059435 |
T |
|
| Q |
159 |
attattctagtaatgtctttcaacatctcttcacaattgcaatcacatggaagctt |
214 |
Q |
| |
|
| || ||| | ||||||| || | |||||||||||||||||||||||||||| |
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|
| T |
22059436 |
aacatcacagtcaactctttcatcaccacttcacaattgcaatcacatggaagctt |
22059491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 51253252 - 51253217
Alignment:
| Q |
185 |
ctcttcacaattgcaatcacatggaagctttgtgac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
51253252 |
ctcttcacaattgcaatcacatggaagctttgtgac |
51253217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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