View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_187 (Length: 269)

Name: NF10261A_low_187
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_187
NF10261A_low_187
[»] chr3 (4 HSPs)
chr3 (15-269)||(11897151-11897405)
chr3 (15-269)||(26432588-26432842)
chr3 (116-200)||(23424570-23424654)
chr3 (115-216)||(15473439-15473540)
[»] chr8 (3 HSPs)
chr8 (15-269)||(23132475-23132729)
chr8 (20-178)||(14760016-14760174)
chr8 (116-219)||(26587277-26587380)
[»] chr2 (10 HSPs)
chr2 (15-269)||(14653570-14653824)
chr2 (107-216)||(16322502-16322611)
chr2 (119-268)||(26791322-26791471)
chr2 (122-267)||(40328180-40328325)
chr2 (122-267)||(35135219-35135364)
chr2 (114-200)||(42403209-42403295)
chr2 (119-180)||(573281-573342)
chr2 (119-170)||(35062956-35063007)
chr2 (122-216)||(3779048-3779142)
chr2 (119-264)||(177504-177649)
[»] chr1 (3 HSPs)
chr1 (15-269)||(20284852-20285106)
chr1 (107-269)||(50236550-50236712)
chr1 (119-216)||(50451951-50452048)
[»] chr4 (5 HSPs)
chr4 (122-269)||(54477407-54477554)
chr4 (116-226)||(14307826-14307936)
chr4 (116-226)||(14291777-14291887)
chr4 (119-216)||(3881771-3881868)
chr4 (116-268)||(46784469-46784621)
[»] scaffold0036 (1 HSPs)
scaffold0036 (119-209)||(75967-76057)
[»] chr6 (3 HSPs)
chr6 (116-269)||(24893833-24893986)
chr6 (116-200)||(24990660-24990744)
chr6 (110-216)||(13599639-13599745)
[»] chr5 (3 HSPs)
chr5 (119-225)||(32874457-32874563)
chr5 (119-269)||(7817135-7817285)
chr5 (114-195)||(6641008-6641089)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 11897405 - 11897151
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 11897151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 26432588 - 26432842
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| ||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattc 214  Q
     || |||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| || || ||||||| |||||||||||||||||||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||||||||||||||  | |  ||||  || |||||||||||||| ||||||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtga 26432842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggca 200  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | |||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 15473439 - 15473540
Alignment:
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattc 214  Q
    |||||| |||||||||||||| |||||  | || || || |  || |||||||||||||||||||| | |||||||||||| ||||  ||||| ||||||    
T  15473439 tgaaagtttttccatgcaaagtatgaattggtatggagaaagtgggtcaccttgtcggaggccatgagtgggcttgaaaggaggcattttgtttccattc 15473538  T
Q  215 ca 216  Q
    ||    
T  15473539 ca 15473540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 23132475 - 23132729
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| |||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtga 23132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  20 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaa 119  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| |||||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  120 gcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 178  Q
    |||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 26587380 - 26587277
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||| |  |||||||| || ||||| ||||| ||||| |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  216 aaag 219  Q
    ||||    
T  26587280 aaag 26587277  T

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Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 14653570 - 14653824
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattc 214  Q
     || ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 14653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgt 206  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||| | |||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  207 tcccattcca 216  Q
    | ||||||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||| |  |||| |||||| |||||| | || ||||||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 268  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 267
Target Start/End: Complemental strand, 40328325 - 40328180
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| |  ||||||||||| |  | |||||| |||||||| |  |    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa 40328226  T
Q  222 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggt 267  Q
    | ||||| ||||| || |  || |||||||||||||| ||||||||    
T  40328225 ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggt 40328180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 267
Target Start/End: Original strand, 35135219 - 35135364
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| |  ||||||||||| |  | |||||| |||||||| |  |    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa 35135318  T
Q  222 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggt 267  Q
    | ||||| || || || |  || |||||||||||||| ||||||||    
T  35135319 ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggt 35135364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  114 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggca 200  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| | |||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 573342 - 573281
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatg 180  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| |||||||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatg 573281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 170  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 3779048 - 3779142
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcca 216  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||| |  ||||||||||| |  | |||||| ||||||||    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca 3779142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| |  ||||||| ||| ||| | ||||| ||||||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 264  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 20285106 - 20284852
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||   ||||| |||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  215 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 20284852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 50236550 - 50236712
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgt 206  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||| |  ||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  207 tcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    |||| ||||| |  ||||||||  | || || |  || |||||||||||||| ||| ||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtga 50236712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 50452048 - 50451951
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcca 216  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| |  || |||||| ||||||  ||||| ||||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 50451951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 269
Target Start/End: Original strand, 54477407 - 54477554
Alignment:
Q  122 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattccaaagta 221  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| |  ||||||||||  || | |||||| ||||||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  222 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtga 54477554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 14307936 - 14307826
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| |||||||| |||| ||||||||| ||||| ||    ||||| ||||||| ||||||||| || ||||| |||||  ||| ||||||||||||||    
T  14307936 gaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14307837  T
Q  216 aaagtatagag 226  Q
    |||| ||||||    
T  14307836 aaagaatagag 14307826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 14291887 - 14291777
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| |||||||| || | ||||||||| ||||| ||    ||||| ||||||| ||||||||| || ||||| |||||  ||| ||||||||||||||    
T  14291887 gaaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14291788  T
Q  216 aaagtatagag 226  Q
    |||| ||||||    
T  14291787 aaagaatagag 14291777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 216
Target Start/End: Complemental strand, 3881868 - 3881771
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcca 216  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| |  || |||||| ||||||  ||||| ||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 3881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 268
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||| |  || |||||||||||||| || || |||||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  216 aaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 268  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcc 209  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| |  |||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 24893833 - 24893986
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattcc 215  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| | |||||||||||| ||||  ||||| |||||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  216 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtga 269  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtga 24893986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 24990660 - 24990744
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggca 200  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| | |||||||||||| ||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggca 24990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  110 gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcc 209  Q
    ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||| |  ||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  210 cattcca 216  Q
    |||||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  219 gtataga 225  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 269
Target Start/End: Complemental strand, 7817285 - 7817135
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaaggcggcaacttgttcccattccaaa 218  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||| |  ||||||||||  || |  |||||||||||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  219 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtga 7817135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 195
Target Start/End: Original strand, 6641008 - 6641089
Alignment:
Q  114 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgagggcttgaaagg 195  Q
    ||||||| ||||||||||| |  ||||| || || || || | ||||||||||| |||||||||||| | ||||||||||||    
T  6641008 ctgaaagtttttccatgcacataatgaagaggtagggagagagcggatcaccttttcggaggccatgagtgggcttgaaagg 6641089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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