View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_19 (Length: 445)

Name: NF10261A_low_19
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_19
NF10261A_low_19
[»] chr6 (2 HSPs)
chr6 (194-433)||(34691008-34691247)
chr6 (7-129)||(34690822-34690944)
[»] chr2 (11 HSPs)
chr2 (194-433)||(26988933-26989172)
chr2 (7-129)||(26988746-26988868)
chr2 (7-90)||(21432814-21432896)
chr2 (7-73)||(27076447-27076513)
chr2 (17-73)||(27028074-27028130)
chr2 (7-95)||(27099528-27099615)
chr2 (9-90)||(27151628-27151709)
chr2 (249-329)||(27028148-27028237)
chr2 (297-337)||(27076180-27076220)
chr2 (245-297)||(27076251-27076303)
chr2 (380-428)||(27076108-27076156)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 194 - 433
Target Start/End: Original strand, 34691008 - 34691247
Alignment:
Q  194 cattgtaacttactgtcatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691008 cattgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 34691107  T
Q  294 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691108 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 34691207  T
Q  394 tcgtgttctttggttgctaaaagacagatatcattatatt 433  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  34691208 tcgtgttctttggttgctaaaagacagatatcattgtatt 34691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 34690822 - 34690944
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccaatgcaccttttcttttcgtaatt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34690822 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 34690921  T
Q  107 gtcactattagtatttattagaa 129  Q
    |||| ||||||||||||||||||    
T  34690922 gtcattattagtatttattagaa 34690944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 194 - 433
Target Start/End: Original strand, 26988933 - 26989172
Alignment:
Q  194 cattgtaacttactgtcatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988933 cattgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 26989032  T
Q  294 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 393  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26989033 ttgcagttgtgtctgttaaatgcttttggaaagtttgcaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 26989132  T
Q  394 tcgtgttctttggttgctaaaagacagatatcattatatt 433  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  26989133 tcgtgttctttggttgctaaaagacagatatcattgtatt 26989172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 26988746 - 26988868
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccaatgcaccttttcttttcgtaatt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26988746 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 26988845  T
Q  107 gtcactattagtatttattagaa 129  Q
    ||||  |||||||||||||||||    
T  26988846 gtcataattagtatttattagaa 26988868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 21432814 - 21432896
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccaatgcacc 90  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||    
T  21432814 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatgcacc 21432896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 27076513 - 27076447
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 73  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27076513 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggtaat 27076447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 27028074 - 27028130
Alignment:
Q  17 cgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 73  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27028074 cgtttgagctcagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 27028130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 27099615 - 27099528
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccaatgcaccttttc 95  Q
    ||||||||||| ||||| |||| |||||||||| || |||||| |||||||||||||||||||| || ||||||| |||||||| ||||    
T  27099615 ttcccttcatcctttgaacccaaaagaaatgcaattgaaaacctatacagattctctagaaggt-atgtgccaactaatgcaccatttc 27099528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 27151628 - 27151709
Alignment:
Q  9 cccttcatcgtttgagccc-agaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccaatgcacc 90  Q
    ||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| || |||||||| | ||||||||    
T  27151628 cccttcatcatttgagccccagaagaaatgcatttaaaaatctatacagattctctagaaagt-atatgccaccgaatgcacc 27151709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 27028148 - 27028237
Alignment:
Q  249 ttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc---------agttgtgtctgttaaatgcttttggaaagctt 329  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||         |||| ||| |||||||||||||||||||||||    
T  27028148 ttttgctgaaagcgtgaaatgctggcattatacagctttcttggtttgctagtgtcttagttatgtttgttaaatgcttttggaaagctt 27028237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 27076220 - 27076180
Alignment:
Q  297 cagttgtgtctgttaaatgcttttggaaagcttacaacaag 337  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  27076220 cagttgtgtttgttaaatgcttttggaaagcttgcaacaag 27076180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 27076303 - 27076251
Alignment:
Q  245 catcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc 297  Q
    ||||||||||||||||  | ||| || ||||||||||||||||||||||||||    
T  27076303 catcttttgctgaaagcgtgaaacgcaggcattatacagctttcttggtttgc 27076251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 27076156 - 27076108
Alignment:
Q  380 gaataaacattcgttcgtgttctttggttgctaaaagacagatatcatt 428  Q
    ||||||||| | |||| |||| |||||||||||||||||| ||||||||    
T  27076156 gaataaacagttgttcatgttatttggttgctaaaagacatatatcatt 27076108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University