View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_191 (Length: 267)
Name: NF10261A_low_191
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_191 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 35361078 - 35361328
Alignment:
| Q |
10 |
aatataaggttatatgcttgaaatttcacgttctttcatttttagtctccaaacttatcacacacaccatttaaaaataaaaatgatgtggcaaataaag |
109 |
Q |
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| T |
35361078 |
aatataaggttatatgcctgaaatttcacgttctttcatttttagtctccaaacttatcacacacaccatttaaaaataaaaattatgtggcaaataaag |
35361177 |
T |
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| Q |
110 |
attcatgtggtcttgttgacacgatcaagggagaagctagccttttgagttttgagagggttcaannnnnnnnnncttcaataagtcaaacaagtccatt |
209 |
Q |
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| T |
35361178 |
attcatgtggtcttgttgacacaatcaagggagaagctagtcttttgagttttgagagggttcaa-tttttttttcttcaataagtcaaacaagtccatt |
35361276 |
T |
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| Q |
210 |
gaaattgacattggagataatcgaaccaaagaccttgagatgagtacagtat |
261 |
Q |
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| T |
35361277 |
gaaattgacattagagataatcgaaccaaataccttgagatgagtacagtat |
35361328 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 18669262 - 18669310
Alignment:
| Q |
189 |
aataagtcaaacaagtccattgaaattgacattggagataatcgaacca |
237 |
Q |
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| T |
18669262 |
aataagtcaaactagtcaatcgaaattgacactggagataatcgaacca |
18669310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 27458971 - 27459015
Alignment:
| Q |
205 |
ccattgaaattgacattggagataatcgaaccaaagaccttgaga |
249 |
Q |
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| T |
27458971 |
ccattgaaattgagattggagataatcaaacctaagaccttgaga |
27459015 |
T |
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