View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_194 (Length: 265)
Name: NF10261A_low_194
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_194 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 3179621 - 3179875
Alignment:
| Q |
7 |
cagagatgaactaacactagaaattaaactgtacatagaaagatcaaccaaaaaattgaggtgcaaattcatcgatcacaagaaacaagttnnnnnnnga |
106 |
Q |
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| T |
3179621 |
cagagaagaactaacactagaaattaaactgtacatagaaagttcaaccaaaaaattgaggagcaaattcatcgatcacaagaaacaagttaaaaaaaga |
3179720 |
T |
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| Q |
107 |
atcttaatatattgagtaattcatcattctccaatctgtaatacaaccccttt--aaaagtaaaccagtaatggcacagaactaatacatatttccaaga |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3179721 |
atcttaatatattgagtaattcatcattctccaatctgtaatacaacccctttttaaaagtaaaccagtaatggcacagaactaatacatatttccaaga |
3179820 |
T |
|
| Q |
205 |
aaccaaatagatccaataactcgtaaaaagggtaaaaaagaatagaagctcaacc |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3179821 |
aaccaaatagatccaataactcgtaaaaagggtaaaaaagaatagaagctcaacc |
3179875 |
T |
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