View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_196 (Length: 264)
Name: NF10261A_low_196
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_196 |
 | |
|
| [»] chr6 (27 HSPs) |
| |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 27)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 5689020 - 5688752
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5689020 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaaca |
5688921 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5688920 |
gtttatctcgtatatgatgaaccaattcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaat |
5688821 |
T |
|
| Q |
199 |
gctattaagagaggtctcttctaatgcacaagattaccatgtcattgt---tagtagtggtgatgaaaa |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
5688820 |
gctattaagagaggtctcttctaatgcacaagattacaatgtcattgttggtagtagtggtgatgaaaa |
5688752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 5177917 - 5178174
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5177917 |
agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca |
5178016 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct |
201 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5178017 |
gtttatctcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgct |
5178110 |
T |
|
| Q |
202 |
at-taagagaggtctcttctaatgcacaagattaccatgtcattgttagtagtggtgatgaaaa |
264 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5178111 |
ttgtcagagaagtctcttctaatgcacaagattacaatgtcattgttagtagtggtgatgaaaa |
5178174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 5279742 - 5280005
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5279742 |
agatgaagagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaaca |
5279841 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgt---caagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5279842 |
gtttatctcgtatatgatgaaccaattggagaaaaaatggagcaatattgccaagaacaagaagaaa------ttgtgtgtagtggtgatgaagatgaat |
5279935 |
T |
|
| Q |
199 |
gctat-taagagaggtctcttctaatgcacaagattaccatgtcattgttagt---agtggtgatgaaaa |
264 |
Q |
| |
|
||| | | ||||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
5279936 |
gctttgtcagagaagtctcttctaatgcacaagaatacaatgtcattgttagtagtagtggtgatgaaaa |
5280005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 5242614 - 5242504
Alignment:
| Q |
17 |
gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatat |
116 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
5242614 |
gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat |
5242515 |
T |
|
| Q |
117 |
gatgaaccaat |
127 |
Q |
| |
|
||||||||||| |
|
|
| T |
5242514 |
gatgaaccaat |
5242504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 5126746 - 5126597
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| || |||||||||| ||| ||||| ||||||| | |||||||||||||||||||| ||| | |
|
|
| T |
5126746 |
agatgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagct |
5126647 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtca |
151 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||| |||||||||| |
|
|
| T |
5126646 |
gtttatctcatatatgatgaaccaattggtgaaactatgaagcaatgtca |
5126597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 5065566 - 5065338
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||| | || |||||||| ||||| ||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
5065566 |
agatgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaaca |
5065467 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct |
201 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||| | ||||| | |||||| | |||| |||||| |||| ||||||||| ||||||||| |
|
|
| T |
5065466 |
gtttatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgct |
5065367 |
T |
|
| Q |
202 |
at-taagagaggtctcttctaatgcacaa |
229 |
Q |
| |
|
| || | ||| |||||||| |||||||| |
|
|
| T |
5065366 |
ttctaggcgagatctcttctcatgcacaa |
5065338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 5427094 - 5427203
Alignment:
| Q |
18 |
agagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatg |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| ||| ||||||||||||||||| |
|
|
| T |
5427094 |
agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg |
5427193 |
T |
|
| Q |
118 |
atgaaccaat |
127 |
Q |
| |
|
|||||||||| |
|
|
| T |
5427194 |
atgaaccaat |
5427203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 5346207 - 5346327
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |||| |||| || ||||||||||||||||| ||| || |
|
|
| T |
5346207 |
agatgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagca |
5346306 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaa |
122 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
5346307 |
atttatctcatatatgatgaa |
5346327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 5398226 - 5398341
Alignment:
| Q |
4 |
atgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagt |
103 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| |||||||| |
|
|
| T |
5398226 |
atgaagaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagt |
5398325 |
T |
|
| Q |
104 |
ttatctcgtatatgat |
119 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
5398326 |
ttatcttgtatatgat |
5398341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 5180891 - 5180773
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||| |||| ||||||||| || |||||||||||||||| ||| || |
|
|
| T |
5180891 |
agatgaagagggtcagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagca |
5180792 |
T |
|
| Q |
102 |
gtttatctcgtatatgatg |
120 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
5180791 |
atttatctggtatatgatg |
5180773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
| Q |
21 |
gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |||| |
|
|
| T |
5100916 |
gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg |
5100817 |
T |
|
| Q |
121 |
aacca |
125 |
Q |
| |
|
||||| |
|
|
| T |
5100816 |
aacca |
5100812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
| Q |
21 |
gtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |||| |
|
|
| T |
5136017 |
gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg |
5135918 |
T |
|
| Q |
121 |
aacca |
125 |
Q |
| |
|
||||| |
|
|
| T |
5135917 |
aacca |
5135913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 5156130 - 5156007
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||||| |||||||||||||||| || |||||| || | ||||||||||||||| |||||| |
|
|
| T |
5156130 |
agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaaca |
5156031 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaacca |
125 |
Q |
| |
|
|||||||| ||||| ||||||||| |
|
|
| T |
5156030 |
gtttatcttgtatacgatgaacca |
5156007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 5372275 - 5372398
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||||| |||||||||||||| | || |||| | || || | ||||||||||||||| |||||| |
|
|
| T |
5372275 |
agatgaagaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaaca |
5372374 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaacca |
125 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
5372375 |
atttatctcgtatacgatgaacca |
5372398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 5098389 - 5098523
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||| | ||||| ||| ||||||||||||||||| |||||||||||||||| || |||||| || ||| ||||||||||||| || ||| || |
|
|
| T |
5098389 |
agatgaggagagccagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagca |
5098488 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaatccgtgaaaa |
136 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
5098489 |
gtttatctggtatatgatgaacaaattggtgaaaa |
5098523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 23127407 - 23127306
Alignment:
| Q |
22 |
tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatga |
121 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||| |||||||| || |||||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
23127407 |
tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga |
23127308 |
T |
|
| Q |
122 |
ac |
123 |
Q |
| |
|
|| |
|
|
| T |
23127307 |
ac |
23127306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 5351578 - 5351701
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||| ||| |||||| || || | || ||||||||| || ||| | |
|
|
| T |
5351578 |
agatgaggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagta |
5351677 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaacca |
125 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5351678 |
gtttatctcgtatatgatgaacca |
5351701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 5352980 - 5352855
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| || ||| || ||||||| ||||| ||| |||||| || || ||||||| |||||||| |||||| |
|
|
| T |
5352980 |
agatgaggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaaca |
5352881 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaat |
127 |
Q |
| |
|
||||||| ||||||||| ||||||| |
|
|
| T |
5352880 |
atttatctggtatatgataaaccaat |
5352855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 2939094 - 2939216
Alignment:
| Q |
3 |
gatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacag |
102 |
Q |
| |
|
|||||||| || ||||| |||||||||||| || ||||| |||||||||||||||| || |||| | || || | || |||||||||||| ||||| |
|
|
| T |
2939094 |
gatgaagaagggcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaa |
2939193 |
T |
|
| Q |
103 |
tttatctcgtatatgatgaacca |
125 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
2939194 |
tttatctcgtatatgatgaacca |
2939216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 5072799 - 5072674
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||| ||| ||||| ||||||||||||| |||| |||| |||| |||||||||||| || |||| | |
|
|
| T |
5072799 |
agatgatgagggcgagagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaata |
5072700 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaat |
127 |
Q |
| |
|
|||||||| |||| |||||| |||| |
|
|
| T |
5072699 |
atttatctcatatacgatgaatcaat |
5072674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 5283328 - 5283223
Alignment:
| Q |
15 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
114 |
Q |
| |
|
||||| ||| |||||||||| ||||| |||||||||||||||| | | ||||||||| ||| |||||||||||||||| ||| || ||||||| |||| |
|
|
| T |
5283328 |
cagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtat |
5283229 |
T |
|
| Q |
115 |
atgatg |
120 |
Q |
| |
|
|||||| |
|
|
| T |
5283228 |
atgatg |
5283223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
| Q |
26 |
atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||| | || | |||||||| || || ||| ||| ||||||||||||||||| |
|
|
| T |
5439213 |
atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg |
5439307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 5253718 - 5253827
Alignment:
| Q |
9 |
gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc |
108 |
Q |
| |
|
||||| || |||||| ||| |||||| |||||| | || ||||||||| ||||| ||||||||| ||| ||||||||||||||| || |||||||||| |
|
|
| T |
5253718 |
gaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatc |
5253817 |
T |
|
| Q |
109 |
tcgtatatga |
118 |
Q |
| |
|
|| ||||||| |
|
|
| T |
5253818 |
tcatatatga |
5253827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 5334363 - 5334455
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa |
94 |
Q |
| |
|
|||||||||||| |||| ||||||||| || |||||||| |||||||||||||||| |||| |||||| || || | ||||||| ||||||| |
|
|
| T |
5334363 |
agatgaagaggggtagagggtagtatcatgtctagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa |
5334455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 5124553 - 5124439
Alignment:
| Q |
9 |
gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc |
108 |
Q |
| |
|
||||| || ||| ||||||| |||||||||||| |||| |||||||| |||||| ||||||| | ||| | |||||||||||| | |||||| | ||| |
|
|
| T |
5124553 |
gaggggcatagattagtatcgagtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtata |
5124454 |
T |
|
| Q |
109 |
tcgtatatgatgaac |
123 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
5124453 |
ttatatatgatgaac |
5124439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 5256218 - 5256113
Alignment:
| Q |
15 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
114 |
Q |
| |
|
||||| ||| |||||||||| ||||| |||||||||||||||| || | |||||| | || | ||||||||||||||| ||| || ||||| | |||| |
|
|
| T |
5256218 |
cagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtat |
5256119 |
T |
|
| Q |
115 |
atgatg |
120 |
Q |
| |
|
|||||| |
|
|
| T |
5256118 |
atgatg |
5256113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 5448794 - 5448905
Alignment:
| Q |
9 |
gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatc |
108 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| | |||||||||||| | |||| |||||| || || | ||||| |||| |||| ||| ||| |||| |
|
|
| T |
5448794 |
gaggggcagaggttagtatcaagtatagaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatc |
5448893 |
T |
|
| Q |
109 |
tcgtatatgatg |
120 |
Q |
| |
|
| |||||||||| |
|
|
| T |
5448894 |
tggtatatgatg |
5448905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 4122747 - 4122615
Alignment:
| Q |
16 |
agagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtata |
115 |
Q |
| |
|
||||||| ||||||| ||| |||||| || ||||||||||| ||||| |||||||| ||| |||||||||||| ||| ||| ||||||||||| |||| |
|
|
| T |
4122747 |
agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata |
4122648 |
T |
|
| Q |
116 |
tgatgaaccaatccgtgaaaatatggagcaatg |
148 |
Q |
| |
|
||||||||||||| ||||||| || |||||||| |
|
|
| T |
4122647 |
tgatgaaccaatcggtgaaaaaatagagcaatg |
4122615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 25569036 - 25569217
Alignment:
| Q |
20 |
agtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttga---caacggtttcattgtgaagaaaacaacagtttatctcgtatat |
116 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||| | |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
25569036 |
agtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatac |
25569135 |
T |
|
| Q |
117 |
gatgaaccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat |
198 |
Q |
| |
|
||||||| ||| | |||| ||||||||| ||||| | ||||||||||| |||||| | || |||||||||| |||||| |
|
|
| T |
25569136 |
gatgaactaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat |
25569217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 4132719 - 4132577
Alignment:
| Q |
15 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
114 |
Q |
| |
|
|||||||||||||||| ||| |||||| || ||||||| ||| ||||| ||||||| ||| |||||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
4132719 |
cagagagtagtatcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat |
4132623 |
T |
|
| Q |
115 |
atgatgaaccaatccgtgaaaatatggagcaatgtcaagaacaaga |
160 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||| | |||||| |
|
|
| T |
4132622 |
atgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga |
4132577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 4319406 - 4319296
Alignment:
| Q |
15 |
cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtat |
114 |
Q |
| |
|
|||||||| ||| ||| ||| |||||| || |||| |||||| ||||| ||||||| ||| |||||||||||| ||| ||| ||||||||||| ||| |
|
|
| T |
4319406 |
cagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatat |
4319307 |
T |
|
| Q |
115 |
atgatgaacca |
125 |
Q |
| |
|
||||||||||| |
|
|
| T |
4319306 |
atgatgaacca |
4319296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
| Q |
81 |
ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat |
127 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
7884193 |
ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat |
7884147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
| Q |
82 |
tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat |
127 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
4346621 |
tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat |
4346666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
| Q |
82 |
tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat |
127 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
4362810 |
tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat |
4362855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 47985511 - 47985393
Alignment:
| Q |
1 |
gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | | |
|
|
| T |
47985511 |
gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
47985412 |
T |
|
| Q |
101 |
agtttatctcgtatatgat |
119 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
47985411 |
agtttatcttgtatatgat |
47985393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 48004085 - 48003967
Alignment:
| Q |
1 |
gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | | |
|
|
| T |
48004085 |
gagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
48003986 |
T |
|
| Q |
101 |
agtttatctcgtatatgat |
119 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
48003985 |
agtttatcttgtatatgat |
48003967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 47994798 - 47994680
Alignment:
| Q |
1 |
gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | | |
|
|
| T |
47994798 |
gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
47994699 |
T |
|
| Q |
101 |
agtttatctcgtatatgat |
119 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
47994698 |
agtttatcttgtatatgat |
47994680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 48013370 - 48013252
Alignment:
| Q |
1 |
gagatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaac |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||| ||| ||||||||| || |||||||||||||||| | | | |
|
|
| T |
48013370 |
gagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagc |
48013271 |
T |
|
| Q |
101 |
agtttatctcgtatatgat |
119 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
48013270 |
agtttatcttgtatatgat |
48013252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 36213038 - 36212913
Alignment:
| Q |
2 |
agatgaagagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaaca |
101 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||||||||| || | ||| ||||||||||| ||||||||| ||| ||||||||||||||| ||| | |
|
|
| T |
36213038 |
agatgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcg |
36212939 |
T |
|
| Q |
102 |
gtttatctcgtatatgatgaaccaat |
127 |
Q |
| |
|
|||||||| | |||||||||||||| |
|
|
| T |
36212938 |
atttatctcatttatgatgaaccaat |
36212913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 7974 - 7878
Alignment:
| Q |
22 |
tagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga |
118 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||||| |||||||| |||||||||||| ||| |||||||| ||||||| ||||||| |
|
|
| T |
7974 |
tagtatcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga |
7878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University