View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_203 (Length: 262)
Name: NF10261A_low_203
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_203 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 4123992 - 4124241
Alignment:
| Q |
1 |
ttgttggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttg |
100 |
Q |
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| T |
4123992 |
ttgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttg |
4124091 |
T |
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| Q |
101 |
agctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4124092 |
agctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgact |
4124191 |
T |
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| Q |
201 |
attccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4124192 |
attccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
4124241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 4153342 - 4153591
Alignment:
| Q |
1 |
ttgttggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttg |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153342 |
ttgttggaacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttg |
4153441 |
T |
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| Q |
101 |
agctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgact |
200 |
Q |
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| T |
4153442 |
agctgttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgaca |
4153541 |
T |
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| Q |
201 |
attccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
250 |
Q |
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| T |
4153542 |
attccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
4153591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 4134541 - 4134783
Alignment:
| Q |
5 |
tggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
104 |
Q |
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| T |
4134541 |
tggaacagctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagct |
4134640 |
T |
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| Q |
105 |
gttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattc |
204 |
Q |
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| T |
4134641 |
gttgaatttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattc |
4134740 |
T |
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| Q |
205 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
247 |
Q |
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| T |
4134741 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
4134783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 4145343 - 4145585
Alignment:
| Q |
5 |
tggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagct |
104 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| |||| |
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| T |
4145343 |
tggaacagctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagct |
4145442 |
T |
|
| Q |
105 |
gttgaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgtgactattc |
204 |
Q |
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| T |
4145443 |
gttgaatttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattc |
4145542 |
T |
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| Q |
205 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
247 |
Q |
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| T |
4145543 |
catttgaatctttgagtggttgatctctgtttgcaatccatat |
4145585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 4163697 - 4163950
Alignment:
| Q |
3 |
gttggaacagctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgag |
102 |
Q |
| |
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||||||||||| ||||| || ||||| |||||||||||||| ||||||| || |||| |||| || || | ||||||||||||| |||| ||||||||| |
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| T |
4163697 |
gttggaacagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgag |
4163796 |
T |
|
| Q |
103 |
ctgttgaatttgttgaa----ga--tgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgt |
196 |
Q |
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|||| |||||| ||||| || ||||||| |||||||||| || || ||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
4163797 |
ctgtggaatttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgt |
4163896 |
T |
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| Q |
197 |
gactattccatttgaatctttgagtggttgatctctgtttgcaatccatatatt |
250 |
Q |
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| T |
4163897 |
gactattccatttgaatccttgagtggttgatctctgtttgcaatccatatatt |
4163950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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