View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_212 (Length: 259)
Name: NF10261A_low_212
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_212 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 28402 - 28628
Alignment:
| Q |
14 |
agaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28402 |
agaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttca |
28487 |
T |
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| Q |
114 |
cgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28488 |
cgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
28587 |
T |
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| Q |
214 |
gtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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| T |
28588 |
gtcaagcaaagtgctcttcctgctattttcttggctatttt |
28628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 275512 - 275738
Alignment:
| Q |
14 |
agaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
275512 |
agaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttca |
275597 |
T |
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| Q |
114 |
cgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
213 |
Q |
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| T |
275598 |
cgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
275697 |
T |
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| Q |
214 |
gtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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| T |
275698 |
gtcaagcaaagtgctcttcctgctattttcttggctatttt |
275738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 26396116 - 26396343
Alignment:
| Q |
14 |
agaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttttca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26396116 |
agaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttttca |
26396201 |
T |
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| Q |
114 |
cgctaccagtagattttctctttcgacctctttcaatgccgctctttattc-ttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396202 |
cgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttct |
26396301 |
T |
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| Q |
213 |
tgtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396302 |
tgtcaagcaaagtgctcttcctgctattttcttggctatttt |
26396343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
129 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
213 |
Q |
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||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
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| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
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