View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_215 (Length: 257)
Name: NF10261A_low_215
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_215 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 2 - 257
Target Start/End: Original strand, 6236342 - 6236595
Alignment:
| Q |
2 |
atatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
101 |
Q |
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| T |
6236342 |
atatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
6236441 |
T |
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| Q |
102 |
aaaacataggtgataggtgcaaatctaannnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaaggtctac |
201 |
Q |
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| T |
6236442 |
aaaacctaggtgataggtgaaaatctaattttttttttttt--atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtctac |
6236539 |
T |
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| Q |
202 |
atcaggaagaaacaaaaacagaaaaggcagagttacatcaaaatcctataataagg |
257 |
Q |
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| T |
6236540 |
atcaggaagaaacaaaaatagaaaaggcagaattacatcaaaatcctataataagg |
6236595 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 33891908 - 33891841
Alignment:
| Q |
24 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagtta |
91 |
Q |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta |
33891841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 33952340 - 33952407
Alignment:
| Q |
24 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagtta |
91 |
Q |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta |
33952407 |
T |
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