View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_221 (Length: 255)
Name: NF10261A_low_221
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_221 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 41705152 - 41704904
Alignment:
| Q |
1 |
tgttgcagccaccaccttggttacccggttcatgggtcacacaagacatgccggtaagcactggtattcggttaaatcagtcacttcctttcaacataac |
100 |
Q |
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| T |
41705152 |
tgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatcagtcacttcctttcaacataac |
41705053 |
T |
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| Q |
101 |
ttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgctcttcctctagtatttgtcaccgttacttggaaaat |
200 |
Q |
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| T |
41705052 |
ttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgctcttcctctagtatttgtcaccgttacttggaaaat |
41704953 |
T |
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| Q |
201 |
tcaggtcatgttgacacaaatcgagcacttgagtgtgcaagtggtcttc |
249 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41704952 |
tcaggtcaagttgacacaaatcgagcacttgagtgtgcaagtggtcttc |
41704904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 1453340 - 1453284
Alignment:
| Q |
4 |
tgcagccaccaccttggttacccggttcatgggtcacacaagacatgccggtaagca |
60 |
Q |
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| T |
1453340 |
tgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagca |
1453284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 1465032 - 1464976
Alignment:
| Q |
4 |
tgcagccaccaccttggttacccggttcatgggtcacacaagacatgccggtaagca |
60 |
Q |
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| T |
1465032 |
tgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagca |
1464976 |
T |
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