View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_224 (Length: 254)
Name: NF10261A_low_224
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_224 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 28710876 - 28711101
Alignment:
| Q |
19 |
atccaactcatacacatgtgtaatagctgatgtacaatcatttggtcttaattttttctc--tctttatatagacatgctactttttgatgaacaacaga |
116 |
Q |
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| T |
28710876 |
atccaactcatacacatgtgtaatagctgatgtacaatcattcggtcttaattttctctctctctttatatagacatgctactttttgatgaacaacaga |
28710975 |
T |
|
| Q |
117 |
agaggttagaacaaaattataagagagaatgaattgttcttcaaataatatagaaaacagtgaacaagagtattccctcaccaatctcacttggtattct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28710976 |
agaggttagaacaaaattataagagagaatgaattgttcttcaaataatatagaaaacagtgaacaagagtattccctcaccaatctcacttggtattct |
28711075 |
T |
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| Q |
217 |
ctcacgcttactttcacttccatttt |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28711076 |
ctcacgcttactttcacttccatttt |
28711101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 28716504 - 28716606
Alignment:
| Q |
73 |
tttctctctttatatagacatgctactttttgatgaacaacagaaga------ggttagaacaaaattataagagagaatgaattgttcttcaaataata |
166 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||| | || |||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
28716504 |
tttctctctttatatacacatgctacttgttgatgaacaacataggattaggaggttagaacacaattataagagagaatgaattgttctggaaataata |
28716603 |
T |
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| Q |
167 |
tag |
169 |
Q |
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||| |
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| T |
28716604 |
tag |
28716606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 28705054 - 28705098
Alignment:
| Q |
193 |
ctcaccaatctcacttggtattctctcacgcttactttcacttcc |
237 |
Q |
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| T |
28705054 |
ctcaccaatctcacttggtactctctcacgcttactttcacttcc |
28705098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 28716650 - 28716694
Alignment:
| Q |
193 |
ctcaccaatctcacttggtattctctcacgcttactttcacttcc |
237 |
Q |
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|||| ||||||||||||||| ||||||| |||||||||||||||| |
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| T |
28716650 |
ctcatcaatctcacttggtactctctcatgcttactttcacttcc |
28716694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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