View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_229 (Length: 252)
Name: NF10261A_low_229
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_229 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 225145 - 225389
Alignment:
| Q |
3 |
tgtagtaccatagacacaagctgaaacaaaattgagcatgagagctacaacattaacggttaattggaactggacaaacttttgtatgttaatgtaaaca |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
225145 |
tgtagtacctgagacacaagctgaaacaaaattgagcatgagagctacaacattaacagttaattggaactggacaaacttttgtatgttaatgtaaaca |
225244 |
T |
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| Q |
103 |
gaacgtccccatcttgtaacattcacaattgtggtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaa |
202 |
Q |
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| T |
225245 |
gaacggccccatcttgtaacattcacaattgttgtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaa |
225344 |
T |
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| Q |
203 |
caatgctcaactaataatgctacgttgaatattaaagaaaatggt |
247 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
225345 |
caatgctcaactaataatgctacgtagaatattaaagaaaatggt |
225389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 3 - 247
Target Start/End: Complemental strand, 14592233 - 14591989
Alignment:
| Q |
3 |
tgtagtaccatagacacaagctgaaacaaaattgagcatgagagctacaacattaacggttaattggaactggacaaacttttgtatgttaatgtaaaca |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14592233 |
tgtagtacctgagacacaagctgaaacaaaattgagcatgagagctacaacattaacagttaattggaactggacaaacttttgtatgttaatgtaaaca |
14592134 |
T |
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| Q |
103 |
gaacgtccccatcttgtaacattcacaattgtggtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaa |
202 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14592133 |
gaacggccccatcttgtaacattcacaattgttgtaaagttatcatccattacaatcacatctgcattctcttttgcaacctggacaagataaaggttaa |
14592034 |
T |
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| Q |
203 |
caatgctcaactaataatgctacgttgaatattaaagaaaatggt |
247 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14592033 |
caatgctcaactaataatgctacgtagaatattaaagaaaatggt |
14591989 |
T |
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