View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_231 (Length: 251)

Name: NF10261A_low_231
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_231
NF10261A_low_231
[»] chr1 (5 HSPs)
chr1 (39-251)||(9804675-9804887)
chr1 (11-154)||(9817550-9817693)
chr1 (18-157)||(9817438-9817577)
chr1 (39-147)||(9817341-9817448)
chr1 (215-251)||(9817777-9817813)
[»] scaffold0432 (3 HSPs)
scaffold0432 (11-161)||(11558-11708)
scaffold0432 (39-157)||(11467-11585)
scaffold0432 (218-251)||(11788-11821)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 9804675 - 9804887
Alignment:
Q  39 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 138  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  9804675 tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga 9804774  T
Q  139 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9804775 catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt 9804874  T
Q  239 tcatgaaacttca 251  Q
    |||||||| ||||    
T  9804875 tcatgaaagttca 9804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
Q  11 tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc 110  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||  |||||||| |||||    
T  9817550 tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc 9817649  T
Q  111 tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa 154  Q
    ||||||||| || |||  ||||||||||||||||||||||||||    
T  9817650 tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa 9817693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
Q  18 gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc 117  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||  ||| | |||||||||||||||    
T  9817438 gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc 9817537  T
Q  118 tagcaccatcactgagatcgacatcgatcagaaaaaagaa 157  Q
    || ||||||   ||||||||||||| |||| | |||||||    
T  9817538 taccaccataggtgagatcgacatcaatcaaacaaaagaa 9817577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
Q  39 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 138  Q
    ||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||  ||||| |||||||||||||| || ||||||| ||| ||||||    
T  9817341 tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga 9817439  T
Q  139 catcgatca 147  Q
    |||||||||    
T  9817440 catcgatca 9817448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 9817777 - 9817813
Alignment:
Q  215 tggttatctcttttgatggagttttcatgaaacttca 251  Q
    |||||||||||||||||||| ||||||||||||||||    
T  9817777 tggttatctcttttgatggaattttcatgaaacttca 9817813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 11558 - 11708
Alignment:
Q  11 tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc 110  Q
    |||||| |||||  ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || |||||   ||| | ||||||    
T  11558 tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc 11657  T
Q  111 tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat 161  Q
    |||||| || ||||||| |||||||| ||||||||  ||||||||||||||    
T  11658 tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat 11708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 11467 - 11585
Alignment:
Q  39 tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga 138  Q
    ||||||||||||||||||| |||||| ||||| || | ||| | |||||||||||   || || ||||||||||||| ||| ||| | | ||||||||||    
T  11467 tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga 11566  T
Q  139 catcgatcagaaaaaagaa 157  Q
    ||| ||||| | |||||||    
T  11567 cattgatcaaacaaaagaa 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 11788 - 11821
Alignment:
Q  218 ttatctcttttgatggagttttcatgaaacttca 251  Q
    ||||||||||||||||||||||||||||||||||    
T  11788 ttatctcttttgatggagttttcatgaaacttca 11821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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