View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_233 (Length: 251)

Name: NF10261A_low_233
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_233
NF10261A_low_233
[»] chr3 (13 HSPs)
chr3 (20-251)||(10038623-10038854)
chr3 (16-244)||(10110579-10110817)
chr3 (16-200)||(52918045-52918229)
chr3 (16-244)||(13530018-13530256)
chr3 (16-244)||(50410151-50410389)
chr3 (16-204)||(10000386-10000574)
chr3 (16-242)||(10968785-10969021)
chr3 (16-204)||(10237535-10237722)
chr3 (16-204)||(46913050-46913238)
chr3 (16-244)||(32750-32988)
chr3 (16-251)||(11368625-11368872)
chr3 (16-183)||(47692948-47693115)
chr3 (18-251)||(11362239-11362483)
[»] chr5 (14 HSPs)
chr5 (16-251)||(37261294-37261527)
chr5 (16-251)||(14192807-14193052)
chr5 (16-244)||(25542795-25543033)
chr5 (25-244)||(17871639-17871868)
chr5 (16-244)||(27881063-27881301)
chr5 (16-243)||(39883162-39883399)
chr5 (16-244)||(37372915-37373153)
chr5 (16-244)||(8428576-8428814)
chr5 (16-163)||(24629954-24630101)
chr5 (16-163)||(30346637-30346784)
chr5 (16-163)||(10025042-10025189)
chr5 (21-243)||(3689961-3690193)
chr5 (21-243)||(3876594-3876826)
chr5 (26-59)||(6089199-6089232)
[»] scaffold0262 (1 HSPs)
scaffold0262 (19-251)||(18988-19230)
[»] chr7 (8 HSPs)
chr7 (16-244)||(5828557-5828795)
chr7 (16-244)||(21070064-21070302)
chr7 (25-244)||(22843792-22844021)
chr7 (16-244)||(9001147-9001385)
chr7 (16-244)||(7036699-7036937)
chr7 (16-244)||(12781150-12781389)
chr7 (16-163)||(42232063-42232210)
chr7 (16-244)||(12785980-12786218)
[»] chr2 (11 HSPs)
chr2 (16-244)||(24269072-24269310)
chr2 (16-243)||(27509353-27509590)
chr2 (16-236)||(17683839-17684069)
chr2 (24-243)||(24245812-24246041)
chr2 (16-243)||(27192468-27192705)
chr2 (16-243)||(27842282-27842519)
chr2 (16-244)||(21395349-21395587)
chr2 (16-204)||(35609664-35609852)
chr2 (16-244)||(41920175-41920413)
chr2 (16-244)||(28666174-28666412)
chr2 (16-244)||(37825008-37825246)
[»] chr6 (8 HSPs)
chr6 (16-251)||(2202174-2202419)
chr6 (16-240)||(10187523-10187757)
chr6 (25-244)||(30881315-30881544)
chr6 (16-244)||(18344104-18344342)
chr6 (16-204)||(15333622-15333810)
chr6 (18-204)||(29640080-29640266)
chr6 (18-204)||(31510251-31510437)
chr6 (16-171)||(12517367-12517522)
[»] chr4 (8 HSPs)
chr4 (16-243)||(1860656-1860893)
chr4 (16-244)||(49710152-49710389)
chr4 (16-244)||(35855886-35856124)
chr4 (16-244)||(38518075-38518313)
chr4 (16-244)||(49786830-49787068)
chr4 (16-163)||(55559131-55559278)
chr4 (122-244)||(13337320-13337452)
chr4 (204-244)||(618226-618266)
[»] scaffold0134 (1 HSPs)
scaffold0134 (16-244)||(5262-5499)
[»] scaffold0017 (1 HSPs)
scaffold0017 (16-244)||(186534-186771)
[»] chr1 (11 HSPs)
chr1 (16-244)||(18148667-18148905)
chr1 (16-244)||(2329148-2329383)
chr1 (16-241)||(36207194-36207429)
chr1 (16-244)||(2453119-2453357)
chr1 (16-244)||(16042004-16042242)
chr1 (16-204)||(48238529-48238717)
chr1 (19-244)||(37390154-37390389)
chr1 (16-244)||(6310996-6311235)
chr1 (16-163)||(52500648-52500795)
chr1 (16-251)||(48775330-48775575)
chr1 (157-244)||(48233498-48233595)
[»] scaffold1139 (1 HSPs)
scaffold1139 (20-244)||(983-1217)
[»] chr8 (6 HSPs)
chr8 (16-244)||(21113746-21113984)
chr8 (16-244)||(25218567-25218805)
chr8 (16-244)||(30307156-30307394)
chr8 (16-244)||(7821817-7822055)
chr8 (16-204)||(31978579-31978767)
chr8 (16-244)||(25209049-25209272)
[»] scaffold0073 (2 HSPs)
scaffold0073 (16-240)||(19436-19670)
scaffold0073 (16-244)||(31912-32149)
[»] scaffold0356 (1 HSPs)
scaffold0356 (16-244)||(17878-18109)
[»] scaffold0550 (1 HSPs)
scaffold0550 (16-244)||(574-812)
[»] scaffold0002 (1 HSPs)
scaffold0002 (16-244)||(321338-321576)
[»] scaffold0003 (2 HSPs)
scaffold0003 (20-251)||(182794-183035)
scaffold0003 (18-251)||(165511-165755)
[»] scaffold0118 (1 HSPs)
scaffold0118 (16-163)||(28727-28874)
[»] scaffold0090 (1 HSPs)
scaffold0090 (16-244)||(48938-49176)
[»] scaffold0025 (1 HSPs)
scaffold0025 (16-232)||(16663-16889)
[»] scaffold0888 (1 HSPs)
scaffold0888 (16-128)||(30-142)
[»] scaffold1424 (1 HSPs)
scaffold1424 (16-92)||(1627-1703)
[»] scaffold0107 (1 HSPs)
scaffold0107 (208-244)||(39937-39973)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 10038623 - 10038854
Alignment:
Q  20 catcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaac 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10038623 catcagaattttcacccgatcgacaaacagaatgagagcttaaataatatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaat 10038722  T
Q  120 tgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaagacatcaacggatttg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  10038723 tgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaattgggatacacaaagacatcaacagatttg 10038822  T
Q  220 ttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    ||||||| ||||| |||||||||||| |||||    
T  10038823 ttgtgtctgatataagcaaatcttcgaaaatt 10038854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 10110579 - 10110817
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  10110579 tggacatcagaattttcacccgatcaacaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10110678  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||          ||    
T  10110679 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctgtaagtga 10110778  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||| ||||||||| ||| |||||||||||||||||    
T  10110779 catcaacagatttgttgcgtctgatatgagcaaatcttc 10110817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 52918045 - 52918229
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  52918045 tggacatcagaattttcacccgatcgacaaacaaaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 52918144  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacac 200  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||  ||||||||    
T  52918145 caactgaatcaagcgttggtgcgggtattcccctttcttggaaaaatagcgagtcaccaaggttatcattcaaatcgggatacac 52918229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 13530018 - 13530256
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||| || |||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |||||    
T  13530018 tggacaccaaaattttcacctgatcgacaagcagaaccagagcttaaatactctttctcttcacctggactcagtgacatcatatattcgttaaaatgct 13530117  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||          ||    
T  13530118 caactgaatgaagtgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 13530217  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  13530218 catcaacggatttgttgtgtctgatatgaccaaatcttc 13530256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 50410151 - 50410389
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |||||    
T  50410151 tggacatcagaattttcacccgatcgacaaagagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatatttgttaacatgct 50410250  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    | ||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| | |||||||||||||||||  |||||||||||          ||    
T  50410251 cgactgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagtgggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtga 50410350  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  50410351 catcagcggatttgttgtgtccgatatgagaaaatcttc 50410389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 10000386 - 10000574
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  10000386 tggacatcagaattttcacccgatcaacaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10000485  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||   |||||||||||    
T  10000486 caactgaatcaagcgttggtgcgagtattcctctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaag 10000574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 10969021 - 10968785
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  10969021 tggacatcagaattttcacccgatcgacaaacaaaataagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10968922  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
     |||||||||||| ||||| ||||||||||||||| ||| |||||||||| |||||| ||| |||||||||||||  |||||||||||          |     
T  10968921 aaactgaatcaagcgttggtgcgagtattccccttgcttagaaaaatagcaggtcacgaagtttatcattcaaatcgggatacacaaagtctataagtgg 10968822  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatct 242  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10968821 catcaacggatttgttgtgtccgatatcagcaaatct 10968785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 10237535 - 10237722
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||| |||| |||||    
T  10237535 tggacatcagaattttcacccgatcaacaaacataatcaaagcttaa-tactctttctcttcacctggaatcagtaacatcatatattcgttaacatgct 10237633  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||   |||||||||||    
T  10237634 caactgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaag 10237722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 46913050 - 46913238
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||| ||||||||||||||  |||||||||||||||| |||| |||||    
T  46913050 tggacatcagaatttccccccgatcgacaaacataatcaaagcttaaatactatttttcttcacctggaattggtgacatcatatattcgttaacatgct 46913149  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| | || ||||||||||||||  ||||||||||||    
T  46913150 caactgaatcaagcgttggtgcgagtattctcctttcttggaaaaatagcgggtcgccaaagttatcattcaaatcgggatacacaaag 46913238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 32750 - 32988
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||| ||||||||| ||||||||| |||| |||| |||||    
T  32750 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgct 32849  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  32850 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtccataagtga 32949  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||  ||||| |||||||||||    
T  32950 catcaacggatttgttgtgtttgatatcagcaaatcttc 32988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 11368625 - 11368872
Alignment:
Q  16 tggacatcagaatttt-cacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgc 114  Q
    ||||||||||| |||| ||||| |||||||||  ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||    
T  11368625 tggacatcagactttttcacccaatcgacaaattgaatcagagcttaaatactctttctcttcacctggaatcactgacatcatatattcgttaacatgc 11368724  T
Q  115 tcaactgaatcaagtgttggcgcgagtattcccctttcttgg-aaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa---------- 203  Q
    ||||| |||||||| ||||| |||||||||||| |||||||| ||||| |||||||||| || ||||||||||||||  ||||| |||||              
T  11368725 tcaaccgaatcaagcgttggtgcgagtattcccttttcttggaaaaaagagcgggtcaccaatgttatcattcaaatcgggatatacaaagtctatgagt 11368824  T
Q  204 gacatcaacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  11368825 gacatcaacggatttgttgtgtcggatatgagcaaatcttcgggaatt 11368872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 47692948 - 47693115
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||| |||| |||||    
T  47692948 tggacatcagaattttcgtccgatcgacaaacagaatcagaggttaaatactctttctcttcacctggaattagtgacatcatgtattcgttaacatgct 47693047  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatca 183  Q
    ||||||||||||| ||||| ||||| ||||||||||||||| ||||| | ||||||| ||||||||||    
T  47693048 caactgaatcaagcgttggtgcgaggattcccctttcttgggaaaattgtgggtcaccaaggttatca 47693115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 11362239 - 11362483
Alignment:
Q  18 gacatcagaattttcacccgatcgacaaacagaatcagagcttaaatac-tatttctcttcacctggaatcagtgacatcatatattcattaatatgctc 116  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||| |  | |||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  11362239 gacatcagacttttcgcccgatcgacaaactgaatcagagcttaaaaaaatctttctcttcacctggaatcactgacatcatatattcgttaacatgctc 11362338  T
Q  117 aactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gac 206  Q
    ||| |||||||| ||||| |||||||||||| |||||||||||||||| ||||||| || ||||||||| ||||  ||||| |||||          |||    
T  11362339 aaccgaatcaagcgttggtgcgagtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgac 11362438  T
Q  207 atcaacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    ||||||| ||||||||| || |||||||| |||||||||| ||||    
T  11362439 atcaacgaatttgttgtatcggatatgagtaaatcttcgggaatt 11362483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 37261294 - 37261527
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37261294 tggacatcaaaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 37261393  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaagacatcaacgga 215  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||     
T  37261394 caactgaatcaagtgttggcgcaagtattcccctttcttgaaaaaataacgggtcattaaggttatcattcaaattgggatacacaaagacatcaacgg- 37261492  T
Q  216 tttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
     ||||||||||| |||| ||||||||||||||||||    
T  37261493 -ttgttgtgtccaatataagcaaatcttcggaaatt 37261527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 14193052 - 14192807
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  14193052 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 14192953  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||  |||||||||||          ||    
T  14192952 caactgaattaagcgttggtgcgagtattcccctttcttggaaaaatagcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 14192853  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  14192852 catcaacagatttgttgtgtccgatatgagcaaatcttcagaaatt 14192807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 25543033 - 25542795
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  25543033 tggacatcataattttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 25542934  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||          ||    
T  25542933 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 25542834  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||  ||||||||||||||||||||| ||||||||    
T  25542833 catcaacatatttgttgtgtccgatatgagaaaatcttc 25542795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 17871868 - 17871639
Alignment:
Q  25 gaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaactgaat 124  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  17871868 gaattttcacccgatcgacaaacagaaccagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaat 17871769  T
Q  125 caagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaa----------agacatcaacgg 214  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||   |||||||||           |||||||||||    
T  17871768 caagcgttggtgcgagtatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacgg 17871669  T
Q  215 atttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||||||    
T  17871668 atttgttgtgtccgatatgagcaaatcttc 17871639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 27881063 - 27881301
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||| |||| |||||    
T  27881063 tggacatcataattttcacccgatctacaaatagaatcagagcttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgct 27881162  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    || |||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  27881163 cagctgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 27881262  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  27881263 catcaacggatttgttgggtccgatatcagcaaatcttc 27881301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 39883162 - 39883399
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||  ||||||||| |||| |||| |||||    
T  39883162 tggacatcataattgtcacccgatctacaaacagaatcagagcttaaatactctttctcttcacttggaatcaacgacatcataaattcgttaacatgct 39883261  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||||||| || ||| |||||||||||||| ||  |||||||||||          ||    
T  39883262 caactgaatcaagcgttggtgcgagtattcccctttcttggcaaaatagctgggcaccaaggttatcattcagatcgggatacacaaagtctataagtga 39883361  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatctt 243  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  39883362 catcaacggatttgttgtgtccgatatcagcaaatctt 39883399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 37372915 - 37373153
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||| |||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||  |||| |||||    
T  37372915 tggacatcagaattatcacccgatctaaaaatagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcataaattggttaacatgct 37373014  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  37373015 caactgaatcaagcgttggtgcgagtattcccctttcttcgaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 37373114  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||||||| |||| ||||| |||||||||||    
T  37373115 catcaacggatttgttatgtctgatatcagcaaatcttc 37373153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 8428814 - 8428576
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||| ||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  8428814 tggacatcagaatattcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 8428715  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| || || |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  8428714 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 8428615  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  8428614 catcaacggatttgttgtgtctgatatcagcaaatcttc 8428576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 24630101 - 24629954
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  24630101 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 24630002  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaata 163  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  24630001 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 24629954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 30346784 - 30346637
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  30346784 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 30346685  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaata 163  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30346684 caacttaatcaagtgttggtgcgagtattcccctttcttggaaaaata 30346637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 10025042 - 10025189
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||| |||| ||| |    
T  10025042 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacttggaatcaatgacatcatatattcgttaacatgtt 10025141  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaata 163  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  10025142 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 10025189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 3689961 - 3690193
Alignment:
Q  21 atcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaact 120  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||| |||| |||||||||     
T  3689961 atcagaattttcgcccgatcgacaaactgaatcagagcttaaatactctttctctccacttggaatcactgacatcatatattcgttaacatgctcaacc 3690060  T
Q  121 gaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gacatca 210  Q
    |||||||| ||||| |||||||||| | ||||||| ||||| || ||||||| || ||||||||||||||  ||||| |||||          |||||||    
T  3690061 gaatcaagcgttggtgcgagtattcacttttcttgaaaaaagagtgggtcaccaatgttatcattcaaatcgggatatacaaagtccattagtgacatca 3690160  T
Q  211 acggatttgttgtgtccgatatgagcaaatctt 243  Q
    ||| ||||||||| || ||||||||||||||||    
T  3690161 acgaatttgttgtatcggatatgagcaaatctt 3690193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 3876826 - 3876594
Alignment:
Q  21 atcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaact 120  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||| |||| |||||||||     
T  3876826 atcagaattttcgcccgatcgacaaactgaatcagagcttaaatactctttctctccacttggaatcactgacatcatatattcgttaacatgctcaacc 3876727  T
Q  121 gaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gacatca 210  Q
    |||||||| ||||| |||||||||| | ||||||| ||||| || ||||| | || ||||||||||||||  ||||| |||||          |||||||    
T  3876726 gaatcaagcgttggtgcgagtattcacttttcttgaaaaaagagtgggtccccaatgttatcattcaaatcgggatatacaaagtccattagtgacatca 3876627  T
Q  211 acggatttgttgtgtccgatatgagcaaatctt 243  Q
    ||| ||||||||| || ||||||||||||||||    
T  3876626 acgaatttgttgtatcggatatgagcaaatctt 3876594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 6089199 - 6089232
Alignment:
Q  26 aattttcacccgatcgacaaacagaatcagagct 59  Q
    ||||||||||||||||||||||||||||||||||    
T  6089199 aattttcacccgatcgacaaacagaatcagagct 6089232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 18988 - 19230
Alignment:
Q  19 acatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaa 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  18988 acatcagaattttcactcgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaa 19087  T
Q  119 ctgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gacat 208  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||   ||||||||||          |||||    
T  19088 ctgaatcaagcgttggtgcgagtattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtgacat 19187  T
Q  209 caacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    ||||  |||||||||||||||||||||||||||||| ||||||    
T  19188 caacatatttgttgtgtccgatatgagcaaatcttcagaaatt 19230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 5828795 - 5828557
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  5828795 tggacatcataattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 5828696  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||          ||    
T  5828695 caactgagtcaagtgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 5828596  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||  |||||||||||||||||||||||||||||||    
T  5828595 catcaaaagatttgttgtgtccgatatgagcaaatcttc 5828557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 21070302 - 21070064
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||    
T  21070302 tggacatctaaattttcacccgatcaacaaacagaatcagagcttaaatactctttctcttcaccaggaatcagtgacatcatatattcgttaacatgct 21070203  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| || |||||||||||||| ||  |||||||||||          ||    
T  21070202 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcaggttaccaaggttatcattcagatcgggatacacaaagtctataagtga 21070103  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  21070102 catcaacggatttgttgtgtctgatatgagcaaatcttc 21070064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 22843792 - 22844021
Alignment:
Q  25 gaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaactgaat 124  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  22843792 gaattttcacccgatcgacaaacagaaacagaacttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaat 22843891  T
Q  125 caagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaa----------agacatcaacgg 214  Q
    |||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||| ||||   |||||||||           ||||||||| |    
T  22843892 caagcgttggtgcgagtattcccctttcttggaaaaatagcaggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacag 22843991  T
Q  215 atttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||| |||||||||||||||||    
T  22843992 atttgttgtgtcagatatgagcaaatcttc 22844021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 9001385 - 9001147
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||| |||| |||||    
T  9001385 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 9001286  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaa----------aga 205  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||||||  |||||| |||||||||| ||| ||  ||||| ||||          |||    
T  9001285 caactgaatcaagcgttagtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcaatcagatcgggataaacaaagtctataagaga 9001186  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  9001185 catcaacggatttgttgtgtccgatatcaacaaatcttc 9001147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 7036699 - 7036937
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  7036699 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 7036798  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| |||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  7036799 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaagtagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 7036898  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||| ||| |||||||    
T  7036899 catcaacggatttgttgtgtctgatatcagcgaatcttc 7036937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 12781389 - 12781150
Alignment:
Q  16 tggacatcagaattttcacccgatcg-acaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgc 114  Q
    |||||||||||||||||||||||||  | ||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| ||||    
T  12781389 tggacatcagaattttcacccgatctcaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgc 12781290  T
Q  115 tcaactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------g 204  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          |    
T  12781289 tcaactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtg 12781190  T
Q  205 acatcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||  |||| |||||||||||    
T  12781189 acatcaacggatttgttgtgtcttatatcagcaaatcttc 12781150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 42232063 - 42232210
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  42232063 tggacatcagaattttcacccgagcgacaaacaaaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 42232162  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaata 163  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  42232163 caactgaatcaagcgttggtgagagtattcccctttcttggaaaaata 42232210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 12786218 - 12785980
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||| |||| | ||| |||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |||| |||| |||||    
T  12786218 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 12786119  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| || || |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  ||||||||| |          ||    
T  12786118 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 12786019  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||  ||||| |||||||||||    
T  12786018 catcaacggatttgttgtgtttgatatcagcaaatcttc 12785980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 24269310 - 24269072
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  24269310 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 24269211  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||          ||    
T  24269210 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 24269111  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  24269110 catcaacagatttgttgtgtccgatatgagcaaatcttc 24269072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 27509353 - 27509590
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  27509353 tggacattagaattttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 27509452  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||          ||    
T  27509453 caactgaatcaagcgttgatgcgagtattcccctttcttggaaaaatagcaggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 27509552  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatctt 243  Q
     ||||||| ||||||||||||||| |||||||||||||    
T  27509553 tatcaacgaatttgttgtgtccgacatgagcaaatctt 27509590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 17684069 - 17683839
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  17684069 tggacatcaaaattttcacccgatcgacaaacaaaatcatagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 17683970  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||          ||    
T  17683969 caattgaatcaagcgttggagcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 17683870  T
Q  206 catcaacggatttgttgtgtccgatatgagc 236  Q
    |||||||||||||||||||||| ||||||||    
T  17683869 catcaacggatttgttgtgtccaatatgagc 17683839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 24 - 243
Target Start/End: Original strand, 24245812 - 24246041
Alignment:
Q  24 agaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaactgaa 123  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  24245812 agaattttcacccgatcgacaaacagaatcagatcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaactgaa 24245911  T
Q  124 tcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaa----------agacatcaacg 213  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||  ||||||||||           |||||| |||    
T  24245912 tcaagcgttggtgcgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaggtctataagtgacatccacg 24246011  T
Q  214 gatttgttgtgtccgatatgagcaaatctt 243  Q
    ||||||||||||||| ||||||||||||||    
T  24246012 gatttgttgtgtccgttatgagcaaatctt 24246041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 27192468 - 27192705
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||| |||||    
T  27192468 tggacatcaaaaatttcacccgatcgacaaatagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcatatattcgttaacatgct 27192567  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||||||          ||    
T  27192568 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 27192667  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatctt 243  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  27192668 catcaacagatttgttgtgtccgatatgagcaaatctt 27192705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 27842282 - 27842519
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| |||| |||||    
T  27842282 tggacatcaaaaatttcacccgatcgacaaatagaatcagagcttaaatactctttctcttcacctagaatcagcgacatcatatattcgttaacatgct 27842381  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||||||||          ||    
T  27842382 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagagggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 27842481  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatctt 243  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  27842482 catcaacagatttgttgtgtccgatatgagcaaatctt 27842519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 21395349 - 21395587
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  21395349 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 21395448  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  ||||| |||||          ||    
T  21395449 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatatacaaagtctataagcga 21395548  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  21395549 catcaacggatttgttgtgtccgatatcagcaaatcttc 21395587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 35609664 - 35609852
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||    
T  35609664 tggacatcagaattttcactcgatcgacaaacataatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatact 35609763  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||  | ||||||||||    
T  35609764 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaatgttatcattcaaatcggaatacacaaag 35609852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 41920413 - 41920175
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||| ||||||||||||||||  ||||||||| |||| |||| |||||    
T  41920413 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttatcttcacctggaatcaacgacatcataaattcgttaacatgct 41920314  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
     || ||||||||| || || |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  41920313 taattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 41920214  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  41920213 catcaacggatttgttgtgtctgatatcagcaaatcttc 41920175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 28666412 - 28666174
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||| |||| | ||| |||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |||| |||| |||||    
T  28666412 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 28666313  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| || || |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  ||||||||| |          ||    
T  28666312 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 28666213  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||  ||||| |||||||||||    
T  28666212 catcaacggatttgttgtgtttgatatcagcaaatcttc 28666174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 37825246 - 37825008
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||| |||| | ||| |||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |||| |||| |||||    
T  37825246 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 37825147  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| || || |||||||||||||||||||||||||||||  |||||| |||||||||||| | ||  ||||||||| |          ||    
T  37825146 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacagagtctataagtga 37825047  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||  ||||| |||||||||||    
T  37825046 catcaacggatttgttgtgtttgatatcagcaaatcttc 37825008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 2202419 - 2202174
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  2202419 tggacatcagaattttcacccgatcgacaaatagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 2202320  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||          ||    
T  2202319 ctactgaattaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 2202220  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  2202219 catcaacggatttattgtgttcgatatgagcaaatcttcgggaatt 2202174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 10187523 - 10187757
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  10187523 tggacatcaaaattttcacccgatcgacaaacagaatcatagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 10187622  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||||||||||          ||    
T  10187623 caattgaatcaagtgttggagcgagtattcccttttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 10187722  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaat 240  Q
    ||||||||||||| |||||||| ||||||||||||    
T  10187723 catcaacggattttttgtgtccaatatgagcaaat 10187757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 30881315 - 30881544
Alignment:
Q  25 gaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaactgaat 124  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||    
T  30881315 gaattttcacccgatcgacaaacagaaccagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgctcaacagaat 30881414  T
Q  125 caagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaa----------agacatcaacgg 214  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||   |||||||||           |||||||||||    
T  30881415 caagcgttggtgcgagtatttccctttcttggaaaaatagcgggtcaccaaggttatcatttaaatcgagatacacaatgtctataagtgacatcaacgg 30881514  T
Q  215 atttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||||||    
T  30881515 atttgttgtgtccgatatgagcaaatcttc 30881544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 18344104 - 18344342
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||| |||||||||||||| | || |||||    
T  18344104 tggacatcaaaattttcacccgatcgacaaatagaatcaaagcttaaatactctttctcttcgcctggaatcagcgacatcatatattcgtcaacatgct 18344203  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| || ||||||||||||||||||||||||||  |||||| |||||||||||||||||  |||||||||||          ||    
T  18344204 caactgaatcaagcgttggtgcaagtattcccctttcttggaaaaatagatggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 18344303  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  18344304 catgaacggatttgttgtgtccgatatgagcaaatcttc 18344342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 15333622 - 15333810
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  15333622 tggacatcagaattttcacctgatctacaaacagaatcagagcctaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 15333721  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||| |||||||||||||| ||  ||||||||||||    
T  15333722 caactgaatcaagtgttggtgcgagtattcccatttgttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaag 15333810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 29640266 - 29640080
Alignment:
Q  18 gacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctca 117  Q
    ||||||||||||||||||||||| | ||| ||||| |||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||||    
T  29640266 gacatcagaattttcacccgatctaaaaatagaattagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctca 29640167  T
Q  118 actgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  ||||||||||||    
T  29640166 actgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcaggatacacaaag 29640080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 31510437 - 31510251
Alignment:
Q  18 gacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctca 117  Q
    ||||||||||||||||||||||| | ||| ||||| |||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||||    
T  31510437 gacatcagaattttcacccgatctaaaaatagaattagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctca 31510338  T
Q  118 actgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||  |||||| |||||||||||||| ||| ||||||||||||    
T  31510337 actgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagttggtcaccaaggttatcattcagattaggatacacaaag 31510251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 12517367 - 12517522
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  12517367 tggacatcagaattttcaccccatcatcaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 12517466  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtca 171  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||| |||||    
T  12517467 caactgaatcaagcgttggtgcaaatattcccctttcttggaaaaatagctggtca 12517522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 1860656 - 1860893
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||| |||| |||||    
T  1860656 tggacatcagaattttcacccgatcaacaaacagaatcagagcttaaatactctttctcttcacccagaatcagtgacatcatatattcgttaacatgct 1860755  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||          ||    
T  1860756 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 1860855  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatctt 243  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  1860856 catcaacagatttgttgtgtccgatatgagcaaatctt 1860893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 49710152 - 49710389
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  49710152 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 49710251  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||| ||  |||||||||||          ||    
T  49710252 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 49710351  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  49710352 catcaa-ggatttgttgtgtccgatatcagcaaatcttc 49710389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 35855886 - 35856124
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  35855886 tggacatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 35855985  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  35855986 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 35856085  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  35856086 catcaacggatttgttgtgtctgatatcagcaaatcttc 35856124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 38518075 - 38518313
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  38518075 tggacatcagaattttcacccgatctaaaaatagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 38518174  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||| | ||  |||||||||||          ||    
T  38518175 caattgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcatttagatcgggatacacaaagtctataagtga 38518274  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  38518275 catcaacggatttgttgtgtctgatatcagcaaatcttc 38518313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 49787068 - 49786830
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||| |||| | ||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||    
T  49787068 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaatatgct 49786969  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| || || |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  ||||||||| |          ||    
T  49786968 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 49786869  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  49786868 catcaacggatttgttgtgtctgatatcagcaaatcttc 49786830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 55559278 - 55559131
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  55559278 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 55559179  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaata 163  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  55559178 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 55559131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 13337320 - 13337452
Alignment:
Q  122 aatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gacatcaa 211  Q
    ||||||| ||||  |||||||||||||||||||||||||||||  |||||| |||||||||||||||||   ||||||||||          ||||| ||    
T  13337320 aatcaagcgttgatgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtgacataaa 13337419  T
Q  212 cggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| |||||||||||    
T  13337420 cggatttgttgtgtccgatatcagcaaatcttc 13337452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 618266 - 618226
Alignment:
Q  204 gacatcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  618266 gacatgaacggatttgttgtgtccgatatgagcaaatcttc 618226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 5499 - 5262
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||    
T  5499 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctgaaatcagtgacatcatatattcgttaacatgct 5400  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   ||||||||||          ||    
T  5399 caactgaatcaagcgttggtgcgagtattcccctttcttgg-aaaatagcgggtcaccaaggttatcattcaaatcgagatacacaaagtctataagtga 5301  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||  |||||||||||||||||||||||||||||||    
T  5300 catcaatagatttgttgtgtccgatatgagcaaatcttc 5262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 186534 - 186771
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  186534 tggacatcagaattt-cacccgatcgacaaacagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 186632  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    || |||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||          ||    
T  186633 cagctgaatcaagcgttggtgcgagtattcccctttattggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 186732  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  186733 catcaacagatttgttgtgtacgatatgagcaaatcttc 186771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 18148667 - 18148905
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||| |||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  18148667 tggacataagaattttcatccgatcgacaaacagaataagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 18148766  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||          ||    
T  18148767 caaatgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaattgagatacacaaagtcgataagtga 18148866  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  18148867 catcaacagatttgttgtgtccgatatgagaaaatcttc 18148905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 2329148 - 2329383
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  2329148 tggacatcagaattttcacccgatcgacaaagagaatcagagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 2329247  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacac-------aaagacat 208  Q
    | ||||||||||| ||||| |||||||||||||||||||| |||||||| || |||| |||||||||||||||||  ||||||||       |  |||||    
T  2329248 cgactgaatcaagcgttggtgcgagtattcccctttcttgaaaaaatagtggatcaccaaggttatcattcaaatcgggatacacgtctataagtgacat 2329347  T
Q  209 caacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2329348 caacggatttgttgtgtccgatatgagaaaatcttc 2329383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 36207194 - 36207429
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  36207194 tggacatcataattttcacccgatcgacaaacataatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 36207293  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||  |||||||||||          ||    
T  36207294 caactgaatcaattgttggggcgagtattcccctttcttgaaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 36207393  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatc 241  Q
    ||||||||||||||||||||| |||||||| |||||    
T  36207394 catcaacggatttgttgtgtcggatatgagaaaatc 36207429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 2453357 - 2453119
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||    
T  2453357 tggacatcagaattttcacccgatcgacaaatagaatcagagcctaaatactctttctcttcacctggaattagtgacatcatatattcgttaacatgct 2453258  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  | || ||||||          ||    
T  2453257 caactcaataaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcggaattcacaaagtctataagtga 2453158  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2453157 catcaacggatttgttgtgttcgatatgagcaaatcttc 2453119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 16042004 - 16042242
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||| |||| |||||    
T  16042004 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacttggaatcagcgacatcataaattcgttaacatgct 16042103  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||||||| || ||| |||||||||||||| ||| |||||||||||          ||    
T  16042104 caactgaatcaagcgttggtgcgagtattcccctttcttggcaaaatagctgggcaccaaggttatcattcagattgggatacacaaagtctataagcga 16042203  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  16042204 catcaacggatttgttgtgtccgatatcagcaaatcttc 16042242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 48238717 - 48238529
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |||| |||||    
T  48238717 tggacatcaaagttttcacccgatcgacaaacagaatcagagcttaaatactctttctcttcgcctggaatcagcgacatcatatattcgttaacatgct 48238618  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||  ||||||||||||    
T  48238617 caactgaatcaagcgttggtgcgagtattcctctttcttggaaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaag 48238529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 37390389 - 37390154
Alignment:
Q  19 acatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaa 118  Q
    |||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| ||||||||    
T  37390389 acatcagaattttcacccgatctaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgctcaa 37390290  T
Q  119 ctgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gacat 208  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          |||||    
T  37390289 ctgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtgacat 37390190  T
Q  209 caacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||||||||| ||||| |||||||||||    
T  37390189 caacggatttgttgtgtctgatatcagcaaatcttc 37390154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 6311235 - 6310996
Alignment:
Q  16 tggacatcagaattttcacccgatcg-acaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgc 114  Q
    |||||||||||||||||||||||||  | ||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||| |||| ||||    
T  6311235 tggacatcagaattttcacccgatctcaaaaatagaatcagaggttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgc 6311136  T
Q  115 tcaactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------g 204  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          |    
T  6311135 tcaactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtg 6311036  T
Q  205 acatcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||||||||||||| ||||| ||| |||||||    
T  6311035 acatcaacggatttgttgtgtctgatatcagcgaatcttc 6310996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 52500648 - 52500795
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  52500648 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 52500747  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaata 163  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  52500748 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 52500795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 48775575 - 48775330
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||| ||||  |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||| |||||    
T  48775575 tggacatcagactttttgcccgatcgacaaactgaatcagagcttaaatactctttctcttcacctggaatcatttacatcatatattcgttaacatgct 48775476  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    |||| |||||||| ||||| |||||||||||| ||||||||||||| ||| |||||| || |||||||||| |||  ||||| |||||          ||    
T  48775475 caaccgaatcaagcgttggtgcgagtattcccttttcttggaaaaagagcaggtcaccaatgttatcattctaatcgggatatacaaagtgtattagtga 48775376  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    |||||| | |||||||||||| ||||||||||||||||||| ||||    
T  48775375 catcaaagaatttgttgtgtcggatatgagcaaatcttcgggaatt 48775330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 48233498 - 48233595
Alignment:
Q  157 aaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag----------acatcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||| ||||| | |||||||||||||||||  ||||||||||||          |||||| |||||||||||||| ||||||||| ||||||||    
T  48233498 aaaaatagagggtcgccaaggttatcattcaaatcgggatacacaaagtctataagtgacatcagcggatttgttgtgttcgatatgagtaaatcttc 48233595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 983 - 1217
Alignment:
Q  20 catcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaac 119  Q
    ||||||||||||| |||||| |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||| ||    
T  983 catcagaattttcgcccgattgacaaacaaaatcagagcttaaatactctttctcttcacttggaatcagtgacatcatatattcgttaacatgctcgac 1082  T
Q  120 tgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gacatc 209  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||          ||||||    
T  1083 tgaattaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaggttatcattcaaatcgggatacacaaagtctataagtgacatc 1182  T
Q  210 aacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||||||||||||||||||||||||||    
T  1183 aacggatttgttgtgtccgatatgagcaaatcttc 1217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 21113984 - 21113746
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  21113984 tggacatcagaattttcacccgagcgacaaacagaatcagagtttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 21113885  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| || ||||||||||||| |||||||||||||||||||| |||||||||||||||||   ||||||||||          ||    
T  21113884 caactgaatcaagcgttggtgcaagtattccccttttttggaaaaatagcgggtcaccaaggttatcattcaaatcaagatacacaaagtctataagtga 21113785  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  21113784 catcaacagatttgttgtgtccgatataagcaaatcttc 21113746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 25218805 - 25218567
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  25218805 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 25218706  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  |||||||||||          ||    
T  25218705 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 25218606  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  25218605 catcaacggatttgttgtgtctgatatcagcaaatcttc 25218567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 30307156 - 30307394
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| | ||| |||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  30307156 tggacatcagaattttcacccgatctaaaaatagaatcggagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 30307255  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| ||||||||| |||| ||  |||||||||||          ||    
T  30307256 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcgttcagatcgggatacacaaagtctataagtga 30307355  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  30307356 catcaacggatttgttgtgtccgatatcagcaaatcttc 30307394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 7821817 - 7822055
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||| |||| |||| |||||    
T  7821817 tggacatcagaattttcacccgatctaaaaatagaatcagagcttaaatactctttctcttcacctgaaatcagcgacatcataaattcgttaacatgct 7821916  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  | |||||||||          ||    
T  7821917 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcggaatacacaaagtctataagtga 7822016  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||  ||||| |||||||||||    
T  7822017 catcaacggatttgttgtgtttgatatcagcaaatcttc 7822055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 31978767 - 31978579
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||  || | |||||    
T  31978767 tggacatctgaattttcccccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaatttgttgacatgct 31978668  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaag 204  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||||| |||||| |||||||||||||| ||  ||||||||||||    
T  31978667 caactgaatcaagcgttgatgcgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaag 31978579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 25209272 - 25209049
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||| ||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||| |||||    
T  25209272 tggacatcagaattttcgcccgatctaaaaatagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaattcgttaacatgct 25209173  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaagacatcaacgga 215  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||| |||||||||||| || | |  |||   |  ||||||||||||    
T  25209172 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattaaagtct--ata---agtgacatcaacgga 25209078  T
Q  216 tttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||| || || |||||||||||    
T  25209077 tttgttgtgtctgacatcagcaaatcttc 25209049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 19436 - 19670
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||  || | |||||    
T  19436 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctggaatcagcgacatcataaatttgttgacatgct 19535  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||||| |||||| |||||||||||||| ||  |||||||||||          ||    
T  19536 caactgaatcaagcgttgatgcgagtattcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtttataagtga 19635  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaat 240  Q
    ||||||| ||||||||||||||||||| |||||||    
T  19636 catcaacagatttgttgtgtccgatatcagcaaat 19670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 31912 - 32149
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||| |||| |||| |||||    
T  31912 tggacatcagaattttcacccgatctacaaacagaatcagagtttaaatactctttctcttcacctggaatcagcaacatcataaattcgttaacatgct 32011  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| || |||| |||||||||||||||||||||| |||||| |||||||||||||| ||  |||||||||||          ||    
T  32012 caactgaatcaagcgttggtgcaagta-tcccctttcttggaaaaatagctggtcaccaaggttatcattcagatcgggatacacaaagtctataagtga 32110  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  32111 catcaacggatttgttgtgtccgatatcagcaaatcttc 32149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 18109 - 17878
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  18109 tggacatcataattttcacccgatcggcaaacagaatcaaagcttaaatactctttctcttcacctggaatcagtgacatcatatattcgttaacatgct 18010  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||| ||||||| ||||| ||||||||||||||||||||       ||||| |||| |||||||||||||||||  |||||||||||          ||    
T  18009 caactaaatcaagcgttggtgcgagtattcccctttcttg-------agcggatcaccaaggttatcattcaaatcgggatacacaaagtctataagtga 17917  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17916 catcaacggatttgttgtgtccgatatgagcaaatcttc 17878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 812 - 574
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| |||||    
T  812 tggacatcagaattttcacccaatctacaaacagaatcagaggttaaatactctttcttttcacctggaatcagcgacatcataaattcattaacatgct 713  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||| | ||  |||||||||||          ||    
T  712 caactgaatcaagcgttggtgcgagtattcccctttattggaaaaatagctggtcaccaaggttatcatttagatcgggatacacaaagtttataagtga 613  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||| ||||||||||| ||||| |||||||||||    
T  612 catcaacgggtttgttgtgtctgatatcagcaaatcttc 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 321576 - 321338
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| || |||||| |||| |||| |||||    
T  321576 tggacatcagaattttcacccgatctacaaacagaatcagagcttaaatactctttctcttcacctgaaatcagcgatatcataaattcgttaacatgct 321477  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  ||||||| |||          ||    
T  321476 caactgaatcaagcattggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacaaaaagtctataagtga 321377  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  321376 catcaacggatttgttttgtccgatatcagcaaatcttc 321338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 182794 - 183035
Alignment:
Q  20 catcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgctcaac 119  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||| |||||||||    
T  182794 catcagatttttcgcccgatcgacaaactgaatcagagcttaaatactctttctcttcacttggaatcactgacatcatatattcgttaacatgctcaac 182893  T
Q  120 tgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gacatc 209  Q
     |||||||| ||||| |||||||||||| ||||||||||||| || ||||||| || | ||||||||||||  ||||| |||||          ||||||    
T  182894 cgaatcaagcgttggtgcgagtattcccttttcttggaaaaagagtgggtcaccaatgatatcattcaaatcgggatatacaaagtctattagtgacatc 182993  T
Q  210 aacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    |||| ||||||||| || ||||||||||||||||||| ||||    
T  182994 aacgaatttgttgtatcggatatgagcaaatcttcgggaatt 183035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 165511 - 165755
Alignment:
Q  18 gacatcagaattttcacccgatcgacaaacagaatcagagcttaaatac-tatttctcttcacctggaatcagtgacatcatatattcattaatatgctc 116  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||| |  | |||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  165511 gacatcagacttttcgcccgatcgacaaactgaatcagagcttaaaaaaatctttctcttcacctggaatcactgacatcatatattcgttaacatgctc 165610  T
Q  117 aactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------gac 206  Q
    ||| |||||||| ||||| |||||||||||| |||||||||||||||| ||||||| || ||||||||| ||||  ||||| |||||          |||    
T  165611 aaccgaatcaagcgttggtgcgagtattcccttttcttggaaaaatagtgggtcaccaatgttatcatttaaatcgggatatacaaagtctattagtgac 165710  T
Q  207 atcaacggatttgttgtgtccgatatgagcaaatcttcggaaatt 251  Q
    ||||||| ||||||||| || |||||||| |||||||||| ||||    
T  165711 atcaacgaatttgttgtatcggatatgagtaaatcttcgggaatt 165755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 28874 - 28727
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||| ||||||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |    
T  28874 tggacatcaaaattttcacccaagcgacaaacagaatcagagtttaaatactttttctcttcacctggaatcagtgacatcatatattcgttaacatgtt 28775  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaata 163  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28774 caactgaatcaagcgttggtgcgagtattcccctttcttggaaaaata 28727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 49176 - 48938
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||||||||||||||||||| |||| | ||| |||||||||| ||||||||| ||||||||||||| ||||||| ||||||||| |||| |||| |||||    
T  49176 tggacatcagaattttcacctgatctaaaaatagaatcagaggttaaatactctttctcttcacctagaatcagcgacatcataaattcgttaacatgct 49077  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    ||| ||||||||| || || |||||||||||||||||||||||||||||  |||||| |||||||||||||| ||  ||||||||| |          ||    
T  49076 caattgaatcaagcgtgggtgcgagtattcccctttcttggaaaaatagttggtcaccaaggttatcattcagatcgggatacacagagtctataagtga 48977  T
Q  206 catcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||  ||||| |||||||||||    
T  48976 catcaacggatttgttgtgtttgatatcagcaaatcttc 48938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 16663 - 16889
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    ||||||||||||||||| | |||| || ||||||||||| |||||||| ||| ||||||||||||| |||||||||| ||||||||| | |||| || ||    
T  16663 tggacatcagaattttcgctcgattgaaaaacagaatcatagcttaaaaactctttctcttcacctagaatcagtgaaatcatatatgcgttaacatact 16762  T
Q  116 caactgaatcaagtgttggcgcgagtattcccctttcttggaaaaatagcgggtcactaaggttatcattcaaatttggatacacaaa----------ga 205  Q
    | ||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||||||||||          ||    
T  16763 ccactaaattaagcgttggtgcgagtattcccctttcttggaaaaatagcgggtcaccaaagttatcattcaaatcgggatacacaaagtctataagtga 16862  T
Q  206 catcaacggatttgttgtgtccgatat 232  Q
    |||||||||||||||||||||||||||    
T  16863 catcaacggatttgttgtgtccgatat 16889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 142 - 30
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtgacatcatatattcattaatatgct 115  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||||||||| ||||||  |||||| ||||||||||||| ||||||| |||| |||||    
T  142 tggaaatcagaattttcacccgatcgacatacaaaatcagagcttaaatactctttctcgccacctgaaatcagtgacatcgtatattcgttaacatgct 43  T
Q  116 caactgaatcaag 128  Q
    |||||||||||||    
T  42 caactgaatcaag 30  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1424 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1424
Description:

Target: scaffold1424; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 1627 - 1703
Alignment:
Q  16 tggacatcagaattttcacccgatcgacaaacagaatcagagcttaaatactatttctcttcacctggaatcagtga 92  Q
    ||||||||| ||||||||||||||||| ||||| |||||||| ||||||||  ||||||||||||||||||||||||    
T  1627 tggacatcaaaattttcacccgatcgataaacataatcagagtttaaatacgctttctcttcacctggaatcagtga 1703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 39937 - 39973
Alignment:
Q  208 tcaacggatttgttgtgtccgatatgagcaaatcttc 244  Q
    ||||||||||||||||||||||||| |||||||||||    
T  39937 tcaacggatttgttgtgtccgatatcagcaaatcttc 39973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University