View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_235 (Length: 251)
Name: NF10261A_low_235
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_235 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 29177490 - 29177727
Alignment:
| Q |
9 |
agcatagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactacct |
108 |
Q |
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| T |
29177490 |
agcaaagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactacct |
29177589 |
T |
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| Q |
109 |
gcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcatgagcaattgttg |
208 |
Q |
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| T |
29177590 |
gcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcctgagcaattgttg |
29177689 |
T |
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| Q |
209 |
ttgaccttgttttggcatgccatactgaccttatttgt |
246 |
Q |
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| T |
29177690 |
ttgaccttgttttggcatgccatactgaccttatttgt |
29177727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 167
Target Start/End: Complemental strand, 2055676 - 2055533
Alignment:
| Q |
24 |
tttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactacctgcttccatcccaatg |
123 |
Q |
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|||||||| ||||| |||| || ||||| || ||||| ||||| || ||||||||||| || || ||||| ||||| || || |||||||| ||||||| |
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| T |
2055676 |
tttgaaggaacagaatacagattgtcactttcatttcccaatgagtatccttttaaggccccaaaggtcaaatttgacaccacatgcttccaccccaatg |
2055577 |
T |
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| Q |
124 |
ttgatcttcatggcaacatatgcttggacatacttcaggtaatg |
167 |
Q |
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| T |
2055576 |
ttgatttgcatggcaatatttgcttggacattcttcaggtaatg |
2055533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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