View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_236 (Length: 250)
Name: NF10261A_low_236
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_236 |
 | |
|
| [»] scaffold0175 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 36498886 - 36498655
Alignment:
| Q |
1 |
aacagcgtgcaaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36498886 |
aacagcgtgcaaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgcggtttatcaaataacaggcagtgaga |
36498787 |
T |
|
| Q |
101 |
atggtatcaccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36498786 |
atggtatcaccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccatttt |
36498687 |
T |
|
| Q |
201 |
gttgcggtgtgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36498686 |
gttgcggtgtgtgaggacaactggactgatgt |
36498655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 42359274 - 42359493
Alignment:
| Q |
13 |
aggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatcaccc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
42359274 |
aggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgcgggttatcaaataacaggcaatgagaatggcatcaccc |
42359373 |
T |
|
| Q |
113 |
caaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgt |
212 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42359374 |
caaaatctgaaaggtgcatgagcattgatcaataaagttcgagttgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgt |
42359473 |
T |
|
| Q |
213 |
gaggacaactggactgatgt |
232 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
42359474 |
gaggacaactggactgatgt |
42359493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 45184396 - 45184617
Alignment:
| Q |
13 |
aggatccttaggaaacaaaa--gtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatcac |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
45184396 |
aggatccttaggaaacaaaaaagtgagtatggaatttcattacccaataccgatgatggcatgcggcttatcaaataacaggtagtgagaatggcatcac |
45184495 |
T |
|
| Q |
111 |
cccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgt |
210 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
45184496 |
cccaaaatctgaaaggtgcatgggcattgatcaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagtgacaccattttgttgcagtgt |
45184595 |
T |
|
| Q |
211 |
gtgaggacaactggactgatgt |
232 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
45184596 |
gtgaggacagctggactgatgt |
45184617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 44265312 - 44265534
Alignment:
| Q |
10 |
caaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatca |
109 |
Q |
| |
|
|||||| || |||||||| || ||||||| |||||| |||||| ||||||| || |||||||| |||||||||||||||| ||||||||||| | |||| |
|
|
| T |
44265312 |
caaagggtctttaggaaataagagtgagtgtggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatca |
44265411 |
T |
|
| Q |
110 |
ccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtg |
209 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
44265412 |
ccccaaaatttaaaaggtgcatgagcattgatcaataaggttcgagcagtatcaactaaatgacgatgttttctttcaacgacgccattttgttgtggtg |
44265511 |
T |
|
| Q |
210 |
tgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
44265512 |
tgtggggacaactggattgatgt |
44265534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 7927380 - 7927156
Alignment:
| Q |
7 |
gtgcaaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggta |
106 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| |||||| |||||| ||||||| || |||| ||| |||||||||||||||| ||||||||||| | | |
|
|
| T |
7927380 |
gtgcaaagggtccttaggaaataagagtgagtgtggaatctcattatccaatactgaggatgtcatacggtttatcaaataacaagcagtgagaatagca |
7927281 |
T |
|
| Q |
107 |
tcaccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcg |
206 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| ||||| |||| |||||| ||||| |||| |||||| |||||||||||||| ||||||||||| | |
|
|
| T |
7927280 |
tcaccccaaaatttaaaaggtgcatgagcattgatcaataaggttcaagctgtatcaactaaattacgatg-tttctttcagcgacgccattttgttgtg |
7927182 |
T |
|
| Q |
207 |
gtgtgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|| |||| |||||||| || |||||| |
|
|
| T |
7927181 |
gtttgtggggacaactagattgatgt |
7927156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 6998870 - 6998646
Alignment:
| Q |
10 |
caaaggatccttaggaaacaaaagtgag--tatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtat |
107 |
Q |
| |
|
|||||| ||||||||||| || |||||| | ||| || |||||| ||||||| || |||| ||| ||||||||||||||| ||||||||||| | || |
|
|
| T |
6998870 |
caaagggtccttaggaaataagagtgagagtgtggtatctcattatccaatactgaggatgacatagagtttatcaaataacaagcagtgagaatagcat |
6998771 |
T |
|
| Q |
108 |
caccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcgg |
207 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||| ||||| |||| |||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| || |
|
|
| T |
6998770 |
caccccaaaacttaaaaggtgtatgagcattgatcaataaggttcaagctgtatcaactaaatggcgatgtttcctttcagcgacgccattttgttgtgg |
6998671 |
T |
|
| Q |
208 |
tgtgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||||| |||| ||| || |||||| |
|
|
| T |
6998670 |
tgtgtggggacgactcgattgatgt |
6998646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 37075111 - 37074893
Alignment:
| Q |
14 |
ggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatcacccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
37075111 |
ggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgcggtttatcaaataacaatcagtgagaatggcatcacccc |
37075012 |
T |
|
| Q |
114 |
aaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtg |
213 |
Q |
| |
|
|||| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37075011 |
aaaatctaaaaggtgcatgagcattcatcaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtg |
37074912 |
T |
|
| Q |
214 |
aggacaactggactgatgt |
232 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
37074911 |
aggacagctggactgatgt |
37074893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 46595723 - 46595945
Alignment:
| Q |
10 |
caaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatca |
109 |
Q |
| |
|
|||||| ||||||||||| || ||||||| |||||| |||||| ||||||| || |||||||| |||||||||||||||| |||||||||| | |||| |
|
|
| T |
46595723 |
caaagggtccttaggaaataagagtgagtgtggaatctcattatccaatactgaggatggcatacggtttatcaaataacaatcagtgagaatagcatca |
46595822 |
T |
|
| Q |
110 |
ccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtg |
209 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||| ||||||||||| |||| |
|
|
| T |
46595823 |
ccccaaaatttaaaaggtgcatgagcattgatcaataaggttcgagctgtatcaactaaatgacgatgtttcctttcagtgacgccattttgttgtggtg |
46595922 |
T |
|
| Q |
210 |
tgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
46595923 |
tgtggggacaactggattgatgt |
46595945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 50960835 - 50960613
Alignment:
| Q |
10 |
caaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatca |
109 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||| |||||| ||||||| || |||||||| |||||||||||||||| ||||||||||| | |||| |
|
|
| T |
50960835 |
caaagggtccttaggaaataaaagtgagtgtggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatca |
50960736 |
T |
|
| Q |
110 |
ccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtg |
209 |
Q |
| |
|
||||||| | ||| ||||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
50960735 |
ccccaaagtttaaaacgtgcatgggcattgatcaataaggttcgagctgtatcaactaaatgacgatgttttctttcggcgacgccattttgttgtggtg |
50960636 |
T |
|
| Q |
210 |
tgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
50960635 |
tgtggggacaactggattgatgt |
50960613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 22504669 - 22504891
Alignment:
| Q |
10 |
caaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatca |
109 |
Q |
| |
|
|||||| ||||||||||| || ||||||| |||||| |||||| ||||||| || |||||||| |||||||||||||||| ||||||||| | |||| |
|
|
| T |
22504669 |
caaagggtccttaggaaataagagtgagtgtggaatctcattatccaatactgaggatggcataaggtttatcaaataacaaaaagtgagaatagcatca |
22504768 |
T |
|
| Q |
110 |
ccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtg |
209 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
22504769 |
ccccaaaatttaaaaggtgcatgagcattgatcaataaggttcgagctgtatcaactaaatgacgatgtttcctttcagcaacgccattttgttgtggtg |
22504868 |
T |
|
| Q |
210 |
tgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
22504869 |
tgtggggacaactggattgatgt |
22504891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 33832937 - 33832722
Alignment:
| Q |
17 |
tccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatcaccccaaa |
116 |
Q |
| |
|
|||||||||||||| || || | |||||| || ||| |||| || |||||||||||| |||| |||||||||||||| || |||| | ||||||||||| |
|
|
| T |
33832937 |
tccttaggaaacaagagagaatgtggaatctcgttatccaaaactgatgatggcatgcggttgatcaaataacaggctgtcagaaccgcatcaccccaaa |
33832838 |
T |
|
| Q |
117 |
aactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgagg |
216 |
Q |
| |
|
| | |||||||||||||||||||| ||||| ||||||||||| ||||| | |||||||||||| | ||||| | ||||||||||||||||||||| || |
|
|
| T |
33832837 |
attttaaaggtgcatgagcattgatcaataaggttcgagctgtatcaactagatgacgatgtttccgctcagctaaaccattttgttgcggtgtgtgcgg |
33832738 |
T |
|
| Q |
217 |
acaactggactgatgt |
232 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
33832737 |
acaactagactgatgt |
33832722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 37918842 - 37919057
Alignment:
| Q |
17 |
tccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatcaccccaaa |
116 |
Q |
| |
|
|||||||||||||| || || | |||||| |||||| |||| || ||||||||||||||||| |||||||||||||| || |||| | ||||||||||| |
|
|
| T |
37918842 |
tccttaggaaacaagagagaatgtggaatctcattatccaaaactgatgatggcatgtggttgatcaaataacaggctgtcagaaccgcatcaccccaaa |
37918941 |
T |
|
| Q |
117 |
aactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgagg |
216 |
Q |
| |
|
| | |||||||||||||||||||| ||||| ||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||||||| | || |
|
|
| T |
37918942 |
attttaaaggtgcatgagcattgatcaataaggttcgagctgtatcaactagatgacgatgtttctgctcagctacaccattttgttgcggtgtgcgcgg |
37919041 |
T |
|
| Q |
217 |
acaactggactgatgt |
232 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
37919042 |
ataacgagactgatgt |
37919057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 27465738 - 27465837
Alignment:
| Q |
128 |
gcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggacaactggact |
227 |
Q |
| |
|
||||||| |||||| ||||| || |||||||| ||||| | |||||||||||| | ||||||| || ||||||||| ||||||| |||||||| |||| |
|
|
| T |
27465738 |
gcatgagaattgatcaataaggtacgagctgtatcaactagatgacgatgtttccgctcagcgatactattttgttgtcgtgtgtgtggacaactagact |
27465837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 3277768 - 3277813
Alignment:
| Q |
167 |
aaatgacgatgttttctttcagcgacaccattttgttgcggtgtgt |
212 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||| ||||||| |
|
|
| T |
3277768 |
aaatgacgattttttctttcagctactccattttgttggggtgtgt |
3277813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 28598983 - 28598938
Alignment:
| Q |
167 |
aaatgacgatgttttctttcagcgacaccattttgttgcggtgtgt |
212 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||| ||||||| |
|
|
| T |
28598983 |
aaatgacgattttttctttcagctactccattttgttggggtgtgt |
28598938 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 32665185 - 32665379
Alignment:
| Q |
36 |
agtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatcaccccaaaaactgaaaggtgcatgagc |
135 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||| |||||||||||||||| || |||||||| ||||||| |||| |||||||||||||| || |
|
|
| T |
32665185 |
agtatggaatttcattgcccaacactgatgatggcatgcagtttatcaaataacagatagcgagaatggcatcacccgaaaatctgaaaggtgcatgggc |
32665284 |
T |
|
| Q |
136 |
attgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggacaactggactgat |
230 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
32665285 |
attgatcaataaagttcaagctgtgtcaaccaaatgatgatgttttctttcagcgacaccattttgttgcagtgtgtgaagacagctggactgat |
32665379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 38504390 - 38504168
Alignment:
| Q |
10 |
caaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatca |
109 |
Q |
| |
|
|||||| ||||||||||| || ||||||| |||||| |||||| ||||||| || |||||||| |||||||||||||||| ||||||||||| | |||| |
|
|
| T |
38504390 |
caaagggtccttaggaaataagagtgagtgtggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatca |
38504291 |
T |
|
| Q |
110 |
ccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtg |
209 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
38504290 |
ccccaaaatttaaaaggtgcatgagcattgatcaataaggttcgagctgtatcaactaaatgacgatgtttcctttcagcgacgccattttgttgtggtg |
38504191 |
T |
|
| Q |
210 |
tgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
38504190 |
tgtggggacaactggattgatgt |
38504168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 56 - 225
Target Start/End: Original strand, 34770292 - 34770461
Alignment:
| Q |
56 |
aataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatcaccccaaaaactgaaaggtgcatgagcattgattaataaagttcgag |
155 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||| | |||||||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
34770292 |
aataccgaggatggcatacagtttatcaaataacaagcagtgagaatagcatcaccccaaaatttaaaaggtgcatgagcattgatcaataaggttcgag |
34770391 |
T |
|
| Q |
156 |
ctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggacaactgga |
225 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
34770392 |
ctgtatcaactaaatgacgatgtttcctttcagaaacgccattttgttgtggtgtgtggggacaactgga |
34770461 |
T |
|
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Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 43735074 - 43734852
Alignment:
| Q |
10 |
caaaggatccttaggaaacaaaagtgagtatggaatttcattacccaataccgatgatggcatgtggtttatcaaataacaggcagtgagaatggtatca |
109 |
Q |
| |
|
|||||| ||||||||||| || ||||| | |||||| |||||| ||||||| || |||||||| |||||||||||||||| ||||||||||| | |||| |
|
|
| T |
43735074 |
caaagggtccttaggaaataagagtgattgtggaatctcattatccaatactgaggatggcatacggtttatcaaataacaagcagtgagaatagcatca |
43734975 |
T |
|
| Q |
110 |
ccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtg |
209 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| ||||||| ||| ||||| ||||||| |||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
43734974 |
ccccaaaatttaaaaggtgcatgagcattgatcaataaggttcgagttgtatcaactaaatgacaatgtttcctttcagcgacgccattttgttgtggtg |
43734875 |
T |
|
| Q |
210 |
tgtgaggacaactggactgatgt |
232 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
43734874 |
tgtggggacaactggattgatgt |
43734852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 36998921 - 36998796
Alignment:
| Q |
107 |
tcaccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcg |
206 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| ||||| |||||||||| || || | |||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
36998921 |
tcaccccaaaattttaaaggtgcatgagcattgatcaataaggttcgagctgcatctactagatgaagatgtttccgctcagcgacaccattttgttgcg |
36998822 |
T |
|
| Q |
207 |
gtgtgtgaggacaactggactgatgt |
232 |
Q |
| |
|
||||||| |||||||| ||||||||| |
|
|
| T |
36998821 |
gtgtgtgtggacaactagactgatgt |
36998796 |
T |
|
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 232
Target Start/End: Complemental strand, 19627 - 19491
Alignment:
| Q |
96 |
tgagaatggtatcaccccaaaaactgaaaggtgcatgagcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacacc |
195 |
Q |
| |
|
||||||| | |||||||||||| | ||||||||||||||||| || ||||| ||||||||||| ||||| |||||| ||||||| ||||||||||| || |
|
|
| T |
19627 |
tgagaatagcatcaccccaaaatttaaaaggtgcatgagcatttatcaataaggttcgagctgtatcaactaaatgaagatgtttcctttcagcgacgcc |
19528 |
T |
|
| Q |
196 |
attttgttgcggtgtgtgaggacaactggactgatgt |
232 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
19527 |
attttgttgtggtgtgtggggacaactggattgatgt |
19491 |
T |
|
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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 13327107 - 13327206
Alignment:
| Q |
133 |
agcattgattaataaagttcgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgt |
232 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||| |
|
|
| T |
13327107 |
agcattgatcaataaggttcgagctgtatcaacaatatgacgatgttttcgctcagcgacaccattttgttgtggtgtgtgtggacaactagactgatgt |
13327206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 12895810 - 12895762
Alignment:
| Q |
167 |
aaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgag |
215 |
Q |
| |
|
|||||||||| ||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
12895810 |
aaatgacgatttttacgttcagcgacaccgttttgttgcggtgtgtgag |
12895762 |
T |
|
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Target: scaffold0175 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 32362 - 32282
Alignment:
| Q |
152 |
cgagctgtgtcaaccaaatgacgatgttttctttcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgt |
232 |
Q |
| |
|
||||| |||||||| | ||| | ||||||||||||||| ||||||||||||| ||||| ||||||||||| || |||||| |
|
|
| T |
32362 |
cgagcagtgtcaacaatatgcctatgttttctttcagcagcaccattttgttgaggtgtatgaggacaactagattgatgt |
32282 |
T |
|
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