View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_237 (Length: 250)
Name: NF10261A_low_237
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_237 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 40456826 - 40457066
Alignment:
| Q |
1 |
aattcatattcgtgcctacaaaaacactataacttttacttcattctatgaatcaaatttatttcataacttgatctttaataaaacaagattctgaatc |
100 |
Q |
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| T |
40456826 |
aattcatattcgtgcctacaaaaacactacaacttttacttcattctatgaatcaaatttatttcataacttgatctttaataaaataagattctgaatc |
40456925 |
T |
|
| Q |
101 |
aaaataaacaaaaactgaacttcaacacataatacctttaatttgtccatgacaataatagtttctcattagaaggattagaaaatactaatacaaacta |
200 |
Q |
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| T |
40456926 |
aaaataaacaaaaactgaacttcaacacataatacctttaatttgtccatgacaataatagtttctcattagaaggattagaaaatactaatacaaacta |
40457025 |
T |
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| Q |
201 |
aaagtaatttatagtatttactagtacgtactcatattctt |
241 |
Q |
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| T |
40457026 |
aaagtaatttatagtatttactagtacgtactcattttctt |
40457066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 40362913 - 40362819
Alignment:
| Q |
2 |
attcatattcgtgcctacaaaaacactataac--ttttacttcattctatgaatcaaattt-atttcataacttgatctttaataaaacaagatt |
93 |
Q |
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| T |
40362913 |
attcatattcgtgcctacaaaagcacaacaccatttttacttcattctattaatcaaattttattacataacttgatctttaataaaacaagatt |
40362819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 40409539 - 40409487
Alignment:
| Q |
189 |
taatacaaactaaaagtaatttatagtatttactagtacgtactcatattctt |
241 |
Q |
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| T |
40409539 |
taatgcaatctaaaagtaatctatagtattcactagtacgtactcattttctt |
40409487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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