View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_241 (Length: 250)

Name: NF10261A_low_241
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_241
NF10261A_low_241
[»] chr1 (36 HSPs)
chr1 (20-248)||(31745389-31745616)
chr1 (94-240)||(40377012-40377158)
chr1 (94-241)||(7549813-7549960)
chr1 (119-232)||(36393479-36393592)
chr1 (119-240)||(50974564-50974685)
chr1 (94-226)||(45584509-45584641)
chr1 (94-240)||(31652593-31652738)
chr1 (94-241)||(44719151-44719298)
chr1 (119-211)||(4039621-4039713)
chr1 (119-240)||(5851530-5851649)
chr1 (118-224)||(25302066-25302172)
chr1 (94-195)||(25095579-25095680)
chr1 (97-232)||(34596118-34596250)
chr1 (117-205)||(45753443-45753531)
chr1 (146-240)||(12148289-12148383)
chr1 (94-203)||(34445639-34445748)
chr1 (124-232)||(12636305-12636414)
chr1 (119-232)||(40203076-40203189)
chr1 (119-202)||(5115634-5115717)
chr1 (97-203)||(28672315-28672420)
chr1 (117-238)||(5787434-5787554)
chr1 (151-233)||(42850094-42850176)
chr1 (149-226)||(50222611-50222688)
chr1 (119-206)||(33744159-33744246)
chr1 (145-240)||(48947225-48947320)
chr1 (94-235)||(13954126-13954271)
chr1 (124-206)||(39241430-39241512)
chr1 (150-206)||(48253319-48253375)
chr1 (144-223)||(44442270-44442349)
chr1 (120-205)||(3338051-3338137)
chr1 (118-172)||(5597710-5597764)
chr1 (94-156)||(27396102-27396164)
chr1 (141-239)||(50328308-50328405)
chr1 (113-206)||(14774091-14774184)
chr1 (122-195)||(28171517-28171590)
chr1 (159-203)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (94-240)||(49446583-49446730)
chr4 (94-233)||(44646522-44646661)
chr4 (119-232)||(44647879-44647992)
chr4 (95-239)||(42197007-42197150)
chr4 (94-215)||(6316821-6316942)
chr4 (113-225)||(9802621-9802732)
chr4 (122-237)||(20390023-20390138)
chr4 (111-226)||(42844030-42844145)
chr4 (120-240)||(41468080-41468200)
chr4 (122-216)||(33982423-33982517)
chr4 (144-234)||(44088286-44088376)
chr4 (98-206)||(25196110-25196218)
chr4 (136-229)||(50115059-50115149)
chr4 (94-195)||(40480205-40480306)
chr4 (119-206)||(12103864-12103951)
chr4 (119-232)||(24395194-24395308)
chr4 (135-225)||(49144774-49144864)
chr4 (159-240)||(38494748-38494829)
chr4 (94-173)||(28165362-28165442)
chr4 (123-205)||(39727579-39727660)
chr4 (94-206)||(50086432-50086543)
chr4 (122-195)||(34235910-34235984)
chr4 (159-225)||(36721591-36721657)
chr4 (128-237)||(49769110-49769219)
chr4 (136-195)||(31871090-31871149)
chr4 (94-224)||(52373050-52373181)
chr4 (159-241)||(41370157-41370239)
chr4 (135-224)||(1696194-1696283)
chr4 (119-192)||(53919863-53919936)
chr4 (119-211)||(27346293-27346385)
chr4 (117-192)||(5387947-5388022)
chr4 (120-222)||(51105918-51106020)
chr4 (124-173)||(27706954-27707003)
chr4 (117-225)||(27981368-27981477)
chr4 (94-155)||(44088211-44088272)
chr4 (94-223)||(52650697-52650826)
chr4 (118-206)||(11875452-11875539)
chr4 (94-193)||(23230272-23230372)
chr4 (94-206)||(47560596-47560707)
[»] chr3 (28 HSPs)
chr3 (94-240)||(34758899-34759045)
chr3 (95-240)||(54911988-54912133)
chr3 (119-240)||(18399149-18399271)
chr3 (95-232)||(30687077-30687214)
chr3 (94-233)||(27968170-27968307)
chr3 (94-233)||(52340118-52340257)
chr3 (106-224)||(38388694-38388812)
chr3 (94-205)||(28434481-28434591)
chr3 (94-195)||(779710-779810)
chr3 (94-211)||(38704969-38705086)
chr3 (130-228)||(7754772-7754871)
chr3 (119-232)||(4033026-4033138)
chr3 (141-232)||(19898100-19898191)
chr3 (139-206)||(55110042-55110109)
chr3 (95-232)||(25548196-25548333)
chr3 (123-197)||(43749507-43749581)
chr3 (135-205)||(53433211-53433281)
chr3 (122-177)||(1680511-1680566)
chr3 (115-206)||(2831538-2831629)
chr3 (119-203)||(39976721-39976804)
chr3 (139-214)||(54955783-54955859)
chr3 (118-172)||(11404700-11404754)
chr3 (145-195)||(40546348-40546398)
chr3 (94-131)||(29497248-29497285)
chr3 (94-139)||(29611990-29612035)
chr3 (150-206)||(21490626-21490682)
chr3 (131-195)||(30463992-30464056)
chr3 (137-177)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (94-237)||(8247037-8247180)
chr5 (94-239)||(3263717-3263862)
chr5 (97-240)||(19692696-19692840)
chr5 (122-233)||(5356295-5356406)
chr5 (120-240)||(35395184-35395304)
chr5 (94-239)||(10051700-10051845)
chr5 (94-235)||(28793305-28793446)
chr5 (96-233)||(1354345-1354481)
chr5 (122-240)||(22473432-22473551)
chr5 (119-215)||(21582367-21582463)
chr5 (101-203)||(14042440-14042542)
chr5 (120-217)||(31889611-31889709)
chr5 (94-177)||(4725897-4725979)
chr5 (149-235)||(142350-142436)
chr5 (117-171)||(22871913-22871967)
chr5 (118-203)||(3758194-3758279)
chr5 (131-203)||(26663642-26663714)
chr5 (131-203)||(26935237-26935309)
chr5 (97-232)||(14474998-14475133)
chr5 (94-172)||(27650866-27650944)
chr5 (120-173)||(37976444-37976497)
chr5 (118-172)||(12933327-12933381)
chr5 (131-177)||(24241210-24241256)
chr5 (146-203)||(24241039-24241096)
chr5 (181-241)||(43145883-43145943)
[»] chr2 (26 HSPs)
chr2 (94-241)||(8789826-8789973)
chr2 (94-239)||(44941072-44941216)
chr2 (94-237)||(20682990-20683133)
chr2 (119-233)||(8773670-8773784)
chr2 (117-215)||(4238341-4238438)
chr2 (117-240)||(18053008-18053130)
chr2 (119-232)||(42945012-42945125)
chr2 (94-205)||(6761751-6761862)
chr2 (122-232)||(2393038-2393148)
chr2 (119-233)||(34546265-34546379)
chr2 (106-232)||(42966938-42967066)
chr2 (132-204)||(1070568-1070639)
chr2 (94-239)||(5961954-5962101)
chr2 (94-208)||(3882586-3882700)
chr2 (97-189)||(433551-433643)
chr2 (118-170)||(8898861-8898913)
chr2 (94-206)||(18227092-18227204)
chr2 (120-203)||(2825983-2826066)
chr2 (106-173)||(13442636-13442703)
chr2 (122-206)||(35228732-35228816)
chr2 (119-177)||(3199541-3199599)
chr2 (117-224)||(7271769-7271880)
chr2 (95-232)||(14102297-14102435)
chr2 (118-203)||(31448315-31448400)
chr2 (124-177)||(45212057-45212110)
chr2 (118-206)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (120-240)||(30412910-30413030)
chr7 (94-240)||(8170001-8170147)
chr7 (130-240)||(48137789-48137899)
chr7 (119-213)||(42493703-42493798)
chr7 (94-225)||(47507580-47507711)
chr7 (98-236)||(38452146-38452283)
chr7 (124-221)||(2964049-2964146)
chr7 (94-226)||(16878677-16878809)
chr7 (121-232)||(44391426-44391537)
chr7 (160-236)||(46684550-46684626)
chr7 (117-208)||(5248088-5248179)
chr7 (119-211)||(2741168-2741260)
chr7 (117-235)||(15034793-15034911)
chr7 (122-230)||(43670409-43670517)
chr7 (165-240)||(47305516-47305592)
chr7 (114-203)||(676400-676488)
chr7 (106-205)||(37352436-37352535)
chr7 (111-195)||(33887887-33887971)
chr7 (94-238)||(36015002-36015141)
chr7 (120-234)||(36285774-36285887)
chr7 (94-177)||(45375399-45375483)
chr7 (159-206)||(15995924-15995971)
chr7 (97-206)||(35754017-35754126)
chr7 (146-222)||(44495238-44495314)
chr7 (159-206)||(14574768-14574815)
chr7 (88-195)||(35599837-35599944)
chr7 (117-206)||(31477085-31477175)
chr7 (93-206)||(10031945-10032058)
chr7 (116-169)||(25120218-25120271)
chr7 (165-232)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (94-240)||(31206280-31206426)
chr8 (124-232)||(38956884-38956992)
chr8 (117-241)||(5217747-5217869)
chr8 (119-224)||(45368729-45368834)
chr8 (120-233)||(5020051-5020162)
chr8 (121-232)||(20169716-20169827)
chr8 (94-235)||(9632898-9633040)
chr8 (91-173)||(33636685-33636767)
chr8 (97-223)||(39691121-39691247)
chr8 (119-232)||(7044329-7044442)
chr8 (94-194)||(24103087-24103187)
chr8 (94-186)||(39932721-39932813)
chr8 (94-232)||(10335020-10335159)
chr8 (119-157)||(36819755-36819793)
chr8 (94-169)||(37564393-37564468)
chr8 (95-157)||(2124141-2124203)
chr8 (94-154)||(5968377-5968437)
chr8 (94-206)||(22209376-22209488)
[»] chr6 (12 HSPs)
chr6 (119-240)||(12383008-12383129)
chr6 (119-232)||(16442075-16442188)
chr6 (122-217)||(8176324-8176419)
chr6 (120-203)||(12307821-12307904)
chr6 (94-223)||(31702747-31702874)
chr6 (97-205)||(7465451-7465558)
chr6 (163-238)||(22695473-22695549)
chr6 (95-166)||(22696000-22696071)
chr6 (123-221)||(35241410-35241509)
chr6 (119-232)||(6048268-6048381)
chr6 (122-203)||(26311807-26311889)
chr6 (94-195)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (94-195)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 31745616 - 31745389
Alignment:
Q  20 atcaataaaacatgtcataacaaaaatatttaattatgacaagaacagtgttgagttaatnnnnnnngttaattgtcttgttaaccagtgcctccgagac 119  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||| |    
T  31745616 atcaataaaacatgtcataacataaatatttaattatgacaagaacagtgttgagttaataaaaaa-gttaattgtcttgttaactagtgcctccgaggc 31745518  T
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31745517 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttttatgataagttactat 31745418  T
Q  220 ttaaaggccttaactagtgcctagtgcct 248  Q
    |||||||||||||||||||||||||||||    
T  31745417 ttaaaggccttaactagtgcctagtgcct 31745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 40377012 - 40377158
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| |   | |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||| ||||| | || |||||||||    
T  40377012 gtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgatta 40377111  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||  |||||||||||| |||| |||||||||||||||||||||||    
T  40377112 cacaacttttcatgataaattaccatttaaaggccttaactagtgcc 40377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 7549813 - 7549960
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||| |  || ||||||||||||  |||  ||||||| |||| ||||||||| |||||||||||||||||||   ||||||||||| |    
T  7549813 gtcttgttaacgagtgtcctcgggacactctttaagaatttcaaaagaagaaataattttataaaaaagtcaaatatttcgatttctgatgcattgatca 7549912  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    ||||  ||||||||||||||||| |||||||||||||| |||||||||    
T  7549913 cacaacttttcatgataagttacaatttaaaggccttagctagtgcct 7549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 36393479 - 36393592
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||| ||||  ||||||| ||||||| |||||| ||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |    
T  36393479 cactctttaaggatttcaaaagaaaaaattatgttataaaaaaatcaaatattttgattttcgatgcattgattacacgtattttcatgataagttacca 36393578  T
Q  219 tttaaaggccttaa 232  Q
    |||||||| |||||    
T  36393579 tttaaaggtcttaa 36393592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 50974685 - 50974564
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    ||||||| || ||||  ||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||||||| |||| |    
T  50974685 cactcttgaaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttcatgataaattacca 50974586  T
Q  219 tttaaaggccttaactagtgcc 240  Q
    |||||||| |||||| ||||||    
T  50974585 tttaaaggtcttaacgagtgcc 50974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 45584509 - 45584641
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| | |||| ||| | |||||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||  |||   |||| ||||||||    
T  45584509 gtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgatta 45584608  T
Q  194 cacatattttcatgataagttactatttaaagg 226  Q
    |||||||||||||||||||||||| ||||||||    
T  45584609 cacatattttcatgataagttactttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 31652593 - 31652738
Alignment:
Q  94 gtcttgttaaccagtgcctccg-agacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 192  Q
    ||||||||||| |||| ||||| ||| ||||||||| ||||  |||| || |||||||||||||| ||||||||||||||  |||  ||||||| |||||    
T  31652593 gtcttgttaacgagtgtctccggaga-actctttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgatt 31652690  T
Q  193 acacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  31652691 acacatattttcatgataggttaccatttaaagcccttaactagtgcc 31652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 44719151 - 44719298
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||| | ||| |||||| ||||| ||||| |||| |||| |||||||||||| ||||| ||||||| |||||   |||||| ||||||    
T  44719151 gtcttgttaacgagtgtccccgggacactttttaaggattccaaaaaaatatattattttataaaaaagttaaatattccgatttctgatgcaatgatta 44719250  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    |||| ||||||||||||| |||| ||||||||  ||||||||||||||    
T  44719251 cacacattttcatgataaattaccatttaaagctcttaactagtgcct 44719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 4039713 - 4039621
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 211  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||  | |||||||||||||| ||||||| |||||||    
T  4039713 cactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttatgataa 4039621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 5851530 - 5851649
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||| ||||  ||||||| |||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||| |||  ||||||||||||||| |    
T  5851530 cactctttaaggatttcaaaagaagaaataattttataaaaaaatcaaagatttcgattttcgatgcattgattacaaata--ttcatgataagttacca 5851627  T
Q  219 tttaaaggccttaactagtgcc 240  Q
    ||||||||| ||| ||||||||    
T  5851628 tttaaaggctttatctagtgcc 5851649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 25302066 - 25302172
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 217  Q
    ||||||||||| ||||| |||| || |||| ||| ||||| ||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||     
T  25302066 acactctttaaggattccaaaacaaaaaataattgtataaaaaagtcaaagatttcgattttcaatacattgattacacatattttcatgataagttacc 25302165  T
Q  218 atttaaa 224  Q
    |||||||    
T  25302166 atttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 25095579 - 25095680
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||| | |||| ||||  |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||||||||    
T  25095579 gtcttgttagcgagtgtctccatgacactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgatta 25095678  T
Q  194 ca 195  Q
    ||    
T  25095679 ca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 34596250 - 34596118
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 196  Q
    ||||||||  ||||||||| |||| || |||| ||||||||||||| ||||||||||||||  || ||||||||||||||| || |||||||||||||||    
T  34596250 ttgttaacgggtgcctccg-gacattcattaaggattctaaaagaagaaattattttataa--aattcaaatatttcgattttcaatgcattgattacac 34596154  T
Q  197 atattttcatgataagttactatttaaaggccttaa 232  Q
    ||| |||||| | ||||||  ||||||||| |||||    
T  34596153 ataatttcataaaaagttatcatttaaaggtcttaa 34596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 45753443 - 45753531
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 205  Q
    |||||||||||||||||||||||||| ||||||||| | || || |||||||||||| ||| || |||||||||||||||| |||||||    
T  45753443 gacactctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttca 45753531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 12148383 - 12148289
Alignment:
Q  146 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||||||||| | ||||| |||||||| ||||  | |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  12148383 attattttatgaaaaagtaaaatattttgatttccaatgcattggttacacatattttcatgataagttaccatttaaagactttaactagtgcc 12148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 34445639 - 34445748
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| |||   |||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||  | ||||||||||||    
T  34445639 gtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatta 34445738  T
Q  194 cacatatttt 203  Q
     |||| ||||    
T  34445739 gacatgtttt 34445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 12636414 - 12636305
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat-gataagttactattta 222  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||| ||||||||||  | || ||||||||||||||||||||||  | || ||||||||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatacattgattacacatattttcataaaaaaattactattta 12636315  T
Q  223 aaggccttaa 232  Q
    |||| |||||    
T  12636314 aaggtcttaa 12636305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 40203189 - 40203076
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||| ||||  |||| || ||||||||| |||| ||||||||||||||| |||  | ||||||||||||||||||||||||    ||||||| |    
T  40203189 cactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttacca 40203090  T
Q  219 tttaaaggccttaa 232  Q
    ||||||| ||||||    
T  40203089 tttaaagaccttaa 40203076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 5115717 - 5115634
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattt 202  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| |||  | ||||||| |||||||| ||||    
T  5115717 cactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaattt 5115634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 28672420 - 28672315
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 196  Q
    |||||||  ||||| |||||||||||||| ||  ||||||||| ||  ||||||||| ||| |||||||||||||| |||| |  |||||||||||||||    
T  28672420 ttgttaatgagtgcatccgagacactctt-aagcattctaaaataaacaattattttttaaaaaagtcaaatattttgattttaaatgcattgattacac 28672322  T
Q  197 atatttt 203  Q
    |||||||    
T  28672321 atatttt 28672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 5787554 - 5787434
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 216  Q
    |||||||||||| ||||| ||||||| ||| |||||||||| | ||| ||||||||| |||  | ||||||| ||||||||||||||  ||||||||||     
T  5787554 gacactctttaaggattc-aaaagaagaaaatattttataaaatagttaaatatttcaatttccaatgcattaattacacatatttttttgataagttat 5787456  T
Q  217 tatttaaaggccttaactagtg 238  Q
      ||||||| | ||||||||||    
T  5787455 attttaaagactttaactagtg 5787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 42850176 - 42850094
Alignment:
Q  151 tttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaac 233  Q
    ||||||| ||||| ||||||||||||| |||||||||| |||| | ||||||| ||||||| |||  ||||||||| ||||||    
T  42850176 tttataaaaaagttaaatatttcgattttcgatgcattaattatatatatttttatgataaattatcatttaaaggtcttaac 42850094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 50222688 - 50222611
Alignment:
Q  149 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaagg 226  Q
    ||||||||| ||| ||||||||||  ||| || ||||||||||||||| ||||||||| | || ||||||||||||||    
T  50222688 attttataaaaaaatcaaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaagg 50222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 33744246 - 33744159
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    ||||||||||  ||| ||||| ||  ||||||||| | | ||||||||||||||||||| || |||||||||||||| || |||||||    
T  33744246 cactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcat 33744159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 48947225 - 48947320
Alignment:
Q  145 aattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||| ||| || ||||||  |||| |||  | ||||| |||||||||| |||||||| | ||||||| |||||||| ||||||||||||||    
T  48947225 aattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaagtccttaactagtgcc 48947320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 13954271 - 13954126
Alignment:
Q  94 gtcttgttaaccagtgcctccgag-----acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt 188  Q
    |||||||||||  |||||||||||     ||||||||||| ||||||| ||||| |||||| ||||||| ||| ||||| |||| ||||  | ||||| |    
T  13954271 gtcttgttaacgggtgcctccgaggtggaacactctttaaggattctagaagaagaaattactttataaaaaaatcaaaaattttgatttccaatgca-t 13954173  T
Q  189 gattacacatattttcatgataagttactatttaaaggccttaacta 235  Q
    ||||||| | |||||||  |||| ||   ||||||||||||||||||    
T  13954172 gattacatacattttcacaataaattttcatttaaaggccttaacta 13954126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 39241512 - 39241430
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    ||||| |||| ||||| ||||| ||||||||||| |||   ||||||||  ||| |||||||||||||||||||| |||||||    
T  39241512 tttaaggattttaaaaaaataatttattttataaaaaaaataaatattttaattttcgatgcattgattacacatgttttcat 39241430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 48253319 - 48253375
Alignment:
Q  150 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||||||| |||||||| |||||||||| || || ||||||||| ||||||||||||    
T  48253319 ttttataaaaaagtcaactatttcgattttcaatacattgattatacatattttcat 48253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 44442270 - 44442349
Alignment:
Q  144 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 223  Q
    |||||||| | ||| ||||||||||||||| ||| || || |||| | |||||||||||| || | ||||||||||||||    
T  44442270 aaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaagttactatttaa 44442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 3338137 - 3338051
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattacacatattttca 205  Q
    |||||||||| |||||||||||| ||||||||| || || ||| | || |||||| ||| || |||||||||||||| | |||||||    
T  3338137 actctttaaacattctaaaagaagaaattatttcataaaaaaaattaagtatttcaattttcaatgcattgattacataaattttca 3338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 5597710 - 5597764
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    |||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||    
T  5597710 acactctttaaatattttaaaagaagaaattattctataaaaaagttaaatattt 5597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 27396102 - 27396164
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttata 156  Q
    ||||||||||| ||| || |||||||| |||||||  ||||||||| || |||||||||||||    
T  27396102 gtcttgttaacaagtaccaccgagacattctttaagaattctaaaataagaaattattttata 27396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 50328405 - 50328308
Alignment:
Q  141 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    ||||||||||||||||| ||| | |||||||| |||| | ||| | || |||| ||||||||| |||||||||||  ||||||| | ||||| ||||||    
T  50328405 aataaattattttataaaaaatt-aaatattttgatttttgatactttaattatacatatttttatgataagttatcatttaaaagtcttaattagtgc 50328308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 14774091 - 14774184
Alignment:
Q  113 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||||| | |||||||  ||||||||| ||| ||||||||  | | ||| ||||||||||||||| || ||||||||| || ||| ||||||||    
T  14774091 ccgagatattctttaagcattctaaaataatcaattatttgtttaaaaaatcaaatatttcgattttcaatgcattgaatatacacattttcat 14774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 28171590 - 28171517
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 195  Q
    |||||||  |||| ||||||| |||||||||||||| ||||| ||||||||| ||| |  ||||||| ||||||    
T  28171590 tctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattaca 28171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 15549642 - 15549686
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    ||||| ||||||||||||| || |||||||||||||||| |||||    
T  15549642 aaagtaaaatatttcgattttcaatgcattgattacacacatttt 15549686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 49446730 - 49446583
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatt 192  Q
    ||||||||||| ||||||  || | |||||||||| ||||| ||||||| || ||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  49446730 gtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattgatt 49446631  T
Q  193 acacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49446630 acacatattttcatgataagttactatttaaaggccttaactagtgcc 49446583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 44646661 - 44646522
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| ||| | || ||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  44646661 gtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgatta 44646562  T
Q  194 cacatattttcatgataagttactatttaaaggccttaac 233  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  44646561 cacatattttcatgataagttactattcaaaagccttaac 44646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 44647992 - 44647879
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||    
T  44647992 cactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttcatgataagttacta 44647893  T
Q  219 tttaaaggccttaa 232  Q
    || |||||||||||    
T  44647892 ttcaaaggccttaa 44647879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 42197007 - 42197150
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 194  Q
    |||||||||| ||||||| ||  |||||||||||| |||||||||||| |||||||||||| | ||| |||||||||| |||| ||||| ||||||||||    
T  42197007 tcttgttaacgagtgccttcggaacactctttaaa-attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattac 42197105  T
Q  195 acatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    ||||||||| ||||||| |||| |||||||| | |||||||||||    
T  42197106 acatatttttatgataaattaccatttaaagactttaactagtgc 42197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 6316942 - 6316821
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||||||| | |||||||||||||||  ||||||| |||| ||||||||| |||| |||| |||| |||| || ||||||||||||    
T  6316942 gtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgatta 6316843  T
Q  194 cacatattttcatgataagtta 215  Q
    ||||||||||||||||||||||    
T  6316842 cacatattttcatgataagtta 6316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 9802732 - 9802621
Alignment:
Q  113 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 212  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||  |||| ||||||||||||||||||| ||||||||    
T  9802732 ccgagacactctttaaa-attctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatacattgattacacatatttttatgataag 9802634  T
Q  213 ttactatttaaag 225  Q
    ||| | |||||||    
T  9802633 ttattctttaaag 9802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 20390023 - 20390138
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 221  Q
    |||||||  |||| |||| || |||| ||||||||| |||||||||||||| |||| ||||||||||||| |||||  ||||||||||||||||| ||||    
T  20390023 tctttaagaattccaaaacaagaaataattttataaaaaagtcaaatattttgattttcgatgcattgatcacacaacttttcatgataagttaccattt 20390122  T
Q  222 aaaggccttaactagt 237  Q
    ||| ||||||||||||    
T  20390123 aaaagccttaactagt 20390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 42844030 - 42844145
Alignment:
Q  111 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgata 210  Q
    ||||| ||||||||| |||||||  |||| |  |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42844030 ctccgggacactcttgaaagatttcaaaaaacgaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcataata 42844129  T
Q  211 agttactatttaaagg 226  Q
    | ||||  ||||||||    
T  42844130 aattaccctttaaagg 42844145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 41468080 - 41468200
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    |||||||||  |||| ||||||| ||||||| |||||| ||||| ||||||| |||||   |||||||||||||||  |||||| |||| ||||||| ||    
T  41468080 actctttaagaattccaaaagaagaaattatgttataaaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccat 41468179  T
Q  220 ttaaaggccttaactagtgcc 240  Q
    |||||||||||||||||||||    
T  41468180 ttaaaggccttaactagtgcc 41468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 33982423 - 33982517
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 216  Q
    ||||||| ||||  ||||||| |||||||||||||| ||||| |||||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  33982423 tctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttcatgataagttac 33982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 44088286 - 44088376
Alignment:
Q  144 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaact 234  Q
    |||||||||||| | ||| |||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44088286 aaattattttattaaaaaatcaaatattttgatttttggtgcattgattacacatatcttcatgataagttactatttaaagtccttaact 44088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 25196110 - 25196218
Alignment:
Q  98 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 197  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||  | |  |||| ||||||||    
T  25196110 tgttaacgagtgcctccgaaacactctttaaggattctaaaagaaaaaattaatttataaaaaagtcaaatattttgatttccaagacattaattacaca 25196209  T
Q  198 tattttcat 206  Q
    | |||||||    
T  25196210 tgttttcat 25196218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 50115059 - 50115149
Alignment:
Q  136 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 229  Q
    ||||||| |||||||||||||| ||||||||| |||||||||  | ||||||||||||||||||||   |||||||||||| ||||||||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcctatgcattgattacacatatt---atgataagttaccatttaaaggcct 50115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 40480306 - 40480205
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  40480306 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 40480207  T
Q  194 ca 195  Q
    ||    
T  40480206 ca 40480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 12103951 - 12103864
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||  | |  ||||||||||||||||||||||    
T  12103951 cactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcat 12103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 24395308 - 24395194
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatg-cattgattacacatattttcatgataagttac 216  Q
    |||||||||| ||||||||||||| |||||| ||||||| ||| |||||||||||||||| || | | ||||||||||||||||||||||   |||||||    
T  24395308 cactctttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatt-tctaagacattgattacacatattttcatacaaagttac 24395210  T
Q  217 tatttaaaggccttaa 232  Q
    ||| |||||| |||||    
T  24395209 tatataaaggtcttaa 24395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 49144774 - 49144864
Alignment:
Q  135 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 225  Q
    |||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||||||||| ||||||| |||| || |||| ||||||||    
T  49144774 taaaagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccatttaaag 49144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 38494829 - 38494748
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||| ||||||| |||  || ||||| ||||||||||||||    
T  38494829 aaaggcaaatctttcgattttcgatgcattgattacacatatttttatgataaattatcatataaagaccttaactagtgcc 38494748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 28165362 - 28165442
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 173  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||| |||||||||||| || ||| |||||||||||    
T  28165362 gtcttgttaacgagtgcccctgagatactctttaaagattctaaaagaagaaattattttataaaaaaaatcaaatatttc 28165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 39727660 - 39727579
Alignment:
Q  123 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 205  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||   ||||||||||||||| | |||||||    
T  39727660 ctttaaggattctaaaagaataaattattctataa-aaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 50086543 - 50086432
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| ||| || |||||||||| |||| |||| ||  ||||||| | ||| ||| |||||||||| |||| || ||||||||| ||    
T  50086543 gtcttgttaacgagtgcc-ccgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaata 50086445  T
Q  194 cacatattttcat 206  Q
    |||||||||||||    
T  50086444 cacatattttcat 50086432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 34235910 - 34235984
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattaca 195  Q
    |||||||| ||| ||||||||||||||||||||| || ||||||||| ||||| ||| || ||||||||||||||    
T  34235910 tctttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattttcaatgcattgattaca 34235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 36721657 - 36721591
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 225  Q
    ||||||||||||||| |||||| |||||||||||||||| |||| ||| | || |||||||||||||    
T  36721657 aaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 49769219 - 49769110
Alignment:
Q  128 aagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggc 227  Q
    |||||| |||||||| |||| ||||||||| |||||  || ||||  |||   || | |||||||||||||||||| |||||||||||| |||||||||     
T  49769219 aagattttaaaagaagaaataattttataaaaaagttgaaaattttaatttatgacgaattgattacacatatttttatgataagttaccatttaaaggt 49769120  T
Q  228 cttaactagt 237  Q
    ||||| ||||    
T  49769119 cttaagtagt 49769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 31871149 - 31871090
Alignment:
Q  136 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 195  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||  ||||||||||||||||    
T  31871149 aaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattaca 31871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 52373181 - 52373050
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 192  Q
    ||||||||||| ||| |||||| |||||||||||| |||| | ||| || ||||||||| || || |||||||||||||   ||| || ||||||  |||    
T  52373181 gtcttgttaacgagtacctccgggacactctttaaggattttgaaataagaaattatttcataaaaaaagtcaaatattataattttcaatgcataaatt 52373082  T
Q  193 acacatattttcatgataagttactatttaaa 224  Q
    ||||| |||||||  | || ||||||||||||    
T  52373081 acacaaattttcagaaaaaattactatttaaa 52373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 41370239 - 41370157
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    ||||| ||||||||| ||| || |||||||||||||||| |||||||| | || |||||||| |||| ||||||  |||||||    
T  41370239 aaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtgcct 41370157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 1696283 - 1696194
Alignment:
Q  135 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaa 224  Q
    |||||||| | ||||||  |||| |||| |||||||||| |||  |||||||||||||||| | |||||||  | |||||||||||||||    
T  1696283 taaaagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaa 1696194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 53919863 - 53919936
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 192  Q
    ||||||||||  |||  |||||||||||||||| ||||| ||||||||| ||||| |||  |||||||||||||    
T  53919863 cactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgatt 53919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 27346293 - 27346385
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 211  Q
    |||||||||| |||||||||| || || ||||||||||| ||||||||| |||| ||||   | |||||| |||| ||| ||||| |||||||    
T  27346293 cactctttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattttgatttctggtgcatttattatacacatttttatgataa 27346385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 5388022 - 5387947
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 192  Q
    |||||| | |||||||| |||||||| |||||||||||  | ||| | ||||||||||||| || |||||||||||    
T  5388022 gacactttataaagattttaaaagaagaaattattttaataaaaaattaaatatttcgattttcaatgcattgatt 5387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 51105918 - 51106020
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    |||||||||| ||||||||| ||  ||||||| | ||| ||||||||||||||  ||| || || ||  |||||| ||||||||||| |  |||||||||    
T  51105918 actctttaaatattctaaaataaacaattattatttaaaaaagtcaaatattttaattttcaatacacggattacgcatattttcataaatagttactat 51106017  T
Q  220 tta 222  Q
    |||    
T  51106018 tta 51106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 27707003 - 27706954
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||    
T  27707003 tttaatgattctaaaataagaaatcattttataagaaagtcaaatatttc 27706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 225
Target Start/End: Original strand, 27981368 - 27981477
Alignment:
Q  117 gacactctttaaagattct-aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 215  Q
    ||||||||||||| ||| | |||| || |||||| ||||| | ||| | ||||||||| ||| || || |||| ||||||||||||| |||   ||||||    
T  27981368 gacactctttaaaaatttttaaaaaaaaaaattaatttatgaaaaaattaaatatttcaattttcaatacattaattacacatatttacatacaaagtta 27981467  T
Q  216 ctatttaaag 225  Q
    ||||||||||    
T  27981468 ctatttaaag 27981477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 44088211 - 44088272
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat 155  Q
    ||||||||||| ||||||||||   || | |||||| |||||||||||| ||||||||||||    
T  44088211 gtcttgttaacgagtgcctccggagcaatttttaaaaattctaaaagaagaaattattttat 44088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 52650826 - 52650697
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||||||||||  |||||||||||| || |||||  || |||||||| | ||  || ||||||  |||| ||| || || || ||||||    
T  52650826 gtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaattcactgatta 52650727  T
Q  194 cacatattttcatgataagttactatttaa 223  Q
    ||||  ||||||| | || |||||||||||    
T  52650726 cacaatttttcataaaaaattactatttaa 52650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 11875539 - 11875452
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    ||||||||||||| || ||||| || |||||||||||||  ||| | ||||||||  ||| || |||||||||||| ||| ||||||||    
T  11875539 acactctttaaagcttttaaaaaaagaaattattttatacaaaaattaaatattt-aattttcaatgcattgattatacacattttcat 11875452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 193
Target Start/End: Complemental strand, 23230372 - 23230272
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 192  Q
    ||||| ||||| |||| ||||||||||||||||||  |||| ||||| | ||||||||  || || ||||| |||| |||| ||| || |||||||||||    
T  23230372 gtcttattaacgagtgtctccgagacactctttaagcattccaaaaggagaaattattccatgaaaaaagttaaatgtttcaattttcaatgcattgatt 23230273  T
Q  193 a 193  Q
    |    
T  23230272 a 23230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 47560596 - 47560707
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||| || |||||||||||||||  |||| |||| ||  ||||||||| ||| ||| |||||| ||| |||| |  || |||||||||    
T  47560596 gtcttgttaacgagtgtcttcgagacactctttaatcattccaaaataagcaattatttt-taaaaaaatcaaatgttttgatttttaatacattgatta 47560694  T
Q  194 cacatattttcat 206  Q
    |||  ||||||||    
T  47560695 cacgcattttcat 47560707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 34758899 - 34759045
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||||||| | |||||||||| ||||| |||||||  ||||||||||||| ||||| ||||||||||| ||  |||||||||||||    
T  34758899 gtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatta 34758998  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    || |||||| |||||||||||||||||||||| ||||||||||||||    
T  34758999 catatatttccatgataagttactatttaaagcccttaactagtgcc 34759045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 54912133 - 54911988
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 194  Q
    |||||||||| |||| | ||||  ||||||||||  |||| ||||||||||| |||||||||| ||||| ||||||||| |||   ||||||||||||||    
T  54912133 tcttgttaacgagtgtccccgaagcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttcggatgcattgattac 54912034  T
Q  195 acatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||    
T  54912033 acatattttcatgataagttgtcatttataggccttaactagtgcc 54911988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 18399271 - 18399149
Alignment:
Q  119 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 217  Q
    |||||||||| ||||| ||||||| |||| ||||| |||| |||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||     
T  18399271 cactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattacacaacttttcatgataagttacc 18399172  T
Q  218 atttaaaggccttaactagtgcc 240  Q
    ||||||| |||||||||| ||||    
T  18399171 atttaaaagccttaactaatgcc 18399149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 30687214 - 30687077
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 194  Q
    |||||||||| |||| ||| |||| ||||||||| ||||||||||||| ||||||| |||||| ||| ||||| | || |||| | ||||||||||||||    
T  30687214 tcttgttaacgagtgtctcagagatactctttaaggattctaaaagaagaaattatgttataaaaaaatcaaagagtttgatttttgatgcattgattac 30687115  T
Q  195 acatattttcatgataagttactatttaaaggccttaa 232  Q
    ||||||||||||||||| |||  |||||||| ||||||    
T  30687114 acatattttcatgataaattatcatttaaagaccttaa 30687077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 27968170 - 27968307
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gatt 192  Q
    ||||||||||| |||||| ||| |||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||| |||| |||| |||||||||| ||||    
T  27968170 gtcttgttaacgagtgcc-ccg-gacactttttaaggattccaaaagaagaaataattt-ataaaaaagtcaaagattttgattttcgatgcatttgatt 27968266  T
Q  193 acacatattttcatgataagttactatttaaaggccttaac 233  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27968267 acacatattttcatgataagttaccatttaaaggccttaac 27968307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 233
Target Start/End: Complemental strand, 52340257 - 52340118
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgatt 192  Q
    ||||||||||| ||| | |||||| |||||||||| ||||| ||| ||| |||| ||||||||| |||  ||||| |||||||||  |||||||||||||    
T  52340257 gtcttgttaacgagttc-tccgaggcactctttaaggattccaaaggaagaaataattttataaaaaaaatcaaagatttcgatttccgatgcattgatt 52340159  T
Q  193 acacatattttcatgataagttactatttaaaggccttaac 233  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  52340158 acacatatttttatgataagttaccatttaaaggccttaac 52340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 38388694 - 38388812
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 205  Q
    |||||||||| | |||| ||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| ||  ||||||||||||||||||||| |    
T  38388694 agtgcctccggggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatattttta 38388793  T
Q  206 tgataagttactatttaaa 224  Q
    | | || ||||||||||||    
T  38388794 taaaaatttactatttaaa 38388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 205
Target Start/End: Original strand, 28434481 - 28434591
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||  ||| |||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||| |||| |||||||||||||||    
T  28434481 gtcttgttaacgagtgctcccgggacactctttaaggattttaagagaataaattatttcataa-aaagtcaaatattttgattttcgatgcattgatta 28434579  T
Q  194 cacatattttca 205  Q
    || | |||||||    
T  28434580 cataaattttca 28434591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 779810 - 779710
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||| ||||  | ||||||| ||||    
T  779810 gtcttgttaacgagtgcctcc-agacactctttaaaaattctaaaagaataaattattttatgaaaaagttaaatattttgatttgcaatgcattcatta 779712  T
Q  194 ca 195  Q
    ||    
T  779711 ca 779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 38705086 - 38704969
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| ||||   |||||||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||  ||||||||||||||    
T  38705086 gtcttgttaacgagtgcccccgaagtactctttaagaattcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgatgcattgatta 38704987  T
Q  194 cacatattttcatgataa 211  Q
    |||||||||  |||||||    
T  38704986 cacatatttgtatgataa 38704969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 7754871 - 7754772
Alignment:
Q  130 gattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcc 228  Q
    ||||| ||||||| || | ||||||||| ||| |||||  |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7754871 gattccaaaagaagaagtaattttataaaaaaagtcaacgatttcgatttccgatgcattgattagacatattttcatgataagttactatttaaaggcc 7754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 4033026 - 4033138
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||| ||||| |||||||||| || |||||||||||||| ||| ||||| |||||||||  ||||||| |||||||||| ||||||||||||| ||   |    
T  4033026 cactttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgatgca-tgattacacacattttcatgataaatttaca 4033124  T
Q  219 tttaaaggccttaa 232  Q
    |||||||| |||||    
T  4033125 tttaaaggacttaa 4033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 19898191 - 19898100
Alignment:
Q  141 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaa 232  Q
    ||||||||||||||||  ||| ||||||||||| ||| || ||||||||||||||||||||||||| | || |||| || |||||| |||||    
T  19898191 aataaattattttatataaaaatcaaatatttcaattttcaatgcattgattacacatattttcataaaaatttacaatgtaaaggtcttaa 19898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 55110042 - 55110109
Alignment:
Q  139 agaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||| |||||||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  55110042 agaaaaaattattttataaaaaaatcaaatatttcgattttcaatgcattgattacatatattttcat 55110109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 25548333 - 25548196
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 193  Q
    |||||||||| ||| || |||| ||||||||||| || |||||||||| ||| |||||||||| ||| || ||||||||| |||    ||||||||||||    
T  25548333 tcttgttaacgagtacccccga-acactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgatta 25548235  T
Q  194 cacatattttcatgataagttactatttaaaggccttaa 232  Q
    ||||||||||||| | || |||  ||||||||| |||||    
T  25548234 cacatattttcataaaaatttatcatttaaaggtcttaa 25548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 43749581 - 43749507
Alignment:
Q  123 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 197  Q
    |||||| |||||||||||||||||||||| ||| | ||||||||||||||| ||| || ||  ||||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattacaca 43749507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 53433281 - 53433211
Alignment:
Q  135 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 205  Q
    |||||||| |||||||| ||||| ||||||||||||||  ||| ||||||||||||||||| | |||||||    
T  53433281 taaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttca 53433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 1680566 - 1680511
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  1680566 tctttaaggattcaaaaagaataaattaatttataaaaaagtcaaatattttgatt 1680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 2831538 - 2831629
Alignment:
Q  115 gagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||||||||||||| ||||| |||  || |||||||||| ||||||||||||||||||| ||| |  ||||| |||||| |||  |||||||    
T  2831538 gagacactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttcaattttaaatgcaatgattatacaagttttcat 2831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 39976721 - 39976804
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    |||||||| || ||||||||| ||| ||||||||| ||| |||||||||| |||| ||| || || |||||||||||| ||||||    
T  39976721 cactctttgaacattctaaaataatcaattatttt-taaaaaagtcaaatgtttctattttcaatacattgattacacgtatttt 39976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 54955859 - 54955783
Alignment:
Q  139 agaataaattattttata-ataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtt 214  Q
    |||||||||||||||||| | ||| |||||||||| |||| | |||||||  |||||| |||||||||||| |||||    
T  54955859 agaataaattattttatagaaaaaatcaaatattttgatttttgatgcataaattacatatattttcatgaaaagtt 54955783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 11404700 - 11404754
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    ||||||||| ||||||  |||| ||||||||||||||||| ||||| ||||||||    
T  11404700 acactcttttaagattaaaaaaaaataaattattttataaaaaagttaaatattt 11404754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 40546348 - 40546398
Alignment:
Q  145 aattattttataataaagtcaaatatttcgattctcgatgcattgattaca 195  Q
    ||||||||| ||| |||||||||||||||||||  | ||||||||||||||    
T  40546348 aattattttttaaaaaagtcaaatatttcgatttccaatgcattgattaca 40546398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 29497285 - 29497248
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaaga 131  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  29497285 gtcttgttaacgagtgcctccgagacattctttaaaga 29497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 29611990 - 29612035
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaa 139  Q
    ||||||||||| |||||| ||| ||||||||||||| |||||||||    
T  29611990 gtcttgttaacgagtgcccccgggacactctttaaacattctaaaa 29612035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 21490682 - 21490626
Alignment:
Q  150 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||| ||| ||||||||||||||| ||| || || ||||||| ||||||||||||||    
T  21490682 ttttgtaaaaaagtcaaatatttcaattttcaattcattgatgacacatattttcat 21490626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 30464056 - 30463992
Alignment:
Q  131 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 195  Q
    |||| ||||||| |||||||| ||||| ||||||||| ||||| ||| |  ||||||||||||||    
T  30464056 attccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattaca 30463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 37775411 - 37775371
Alignment:
Q  137 aaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  37775411 aaagaagaaattattttataaaaaagttaaatatttcgatt 37775371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 8247037 - 8247180
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||||||||    
T  8247037 gtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgatta 8247136  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagt 237  Q
     |||  ||||||||||||||||| |||||||| |||||||||||    
T  8247137 tacaacttttcatgataagttaccatttaaagaccttaactagt 8247180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 3263717 - 3263862
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||||| |||| | ||||||||||  |||  ||||||| |||| ||||||||| ||||||||| |||||||||  ||||||||||||||    
T  3263717 gtcttgttaacgagtgcttccggggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgatta 3263816  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  3263817 cacatattttaatgataagttaccatttaaagaccttaactagtgc 3263862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 19692696 - 19692840
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattaca 195  Q
    |||||||| |||| | ||| | |||||||||||||||  ||||||| |||||| ||||||| ||| |||||||||||||||| || ||||||||||||||    
T  19692696 ttgttaacgagtgtccccggggcactctttaaagatttcaaaagaagaaattaatttataaaaaaagtcaaatatttcgattttcaatgcattgattaca 19692795  T
Q  196 catattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||| ||| |||||||||||| |||||||||||||||| ||||||    
T  19692796 cataatttgatgataagttacaatttaaaggccttaaccagtgcc 19692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 5356406 - 5356295
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 221  Q
    ||||||| ||| | |||| || |||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5356406 tctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattt 5356307  T
Q  222 aaaggccttaac 233  Q
    |||| |||||||    
T  5356306 aaagaccttaac 5356295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 35395184 - 35395304
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    ||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | ||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttcatgataagttgccat 35395283  T
Q  220 ttaaaggccttaactagtgcc 240  Q
    | |||||  ||||| ||||||    
T  35395284 taaaaggtgttaacgagtgcc 35395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 10051700 - 10051845
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||| | |  || |||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||  |||  ||||||||||||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgatgcattgatta 10051799  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
     |||  ||||||| ||||||||| ||||||||| ||||||||||||    
T  10051800 tacaacttttcataataagttaccatttaaaggtcttaactagtgc 10051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 28793305 - 28793446
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||||| ||||   | |||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||| ||||    
T  28793305 gtcttgttaacgagtgcttccggtgcgctctttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgatgcattaatta 28793404  T
Q  194 cacatattttcatgataagttactatttaaaggccttaacta 235  Q
    || ||||||| ||||||| |||| |||||||  |||||||||    
T  28793405 catatatttttatgataatttaccatttaaataccttaacta 28793446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 233
Target Start/End: Complemental strand, 1354481 - 1354345
Alignment:
Q  96 cttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 195  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || |||||||||||||| ||||| |||||||||||||    ||  |||||||| |    
T  1354481 cttgttaacaagtgcctccgagacactcttaaga-attctaaaaaaagaaattattttataaaaaagttaaatatttcgatttctaatatattgattata 1354383  T
Q  196 catattttcatgataagttactatttaaaggccttaac 233  Q
     ||||||||||||||| ||||  |||||||||||||||    
T  1354382 tatattttcatgataatttaccttttaaaggccttaac 1354345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 240
Target Start/End: Original strand, 22473432 - 22473551
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatt 220  Q
    ||||||| ||||  ||||||| |||||||||||||| |||  ||||||||||  |||   ||||||||||||||||||||||||| |||||||||| |||    
T  22473432 tctttaaggatttcaaaagaagaaattattttataaaaaaaatcaaatattttaatttctgatgcattgattacacatattttcacgataagttaccatt 22473531  T
Q  221 taaaggccttaactagtgcc 240  Q
    ||||| ||||||||||||||    
T  22473532 taaagcccttaactagtgcc 22473551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 21582367 - 21582463
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 215  Q
    |||| ||||| ||||| |||||||||||||||||||||| | |||||||||||||||||   ||| || |||| ||||| |||||||||||||||||    
T  21582367 cactttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatacaatgatcacacacattttcatgataagtta 21582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 14042440 - 14042542
Alignment:
Q  101 taaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatat 200  Q
    |||| |||| ||||| || |||||||||||||||||||| ||||||||||| | ||| |||||||||||||| ||||  | |||||||||||| ||| ||    
T  14042440 taacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattgattatacaaat 14042539  T
Q  201 ttt 203  Q
    |||    
T  14042540 ttt 14042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 31889611 - 31889709
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 217  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||| || ||||||||| |||    ||||||||||||||||||||||||| | ||||||||    
T  31889611 actctttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 4725979 - 4725897
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||||||| |||| | |||| ||||| ||||| ||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  4725979 gtcttgttaacgagtgtccccgaaacactgtttaaggatttcaaaagaataaattattttataa-aaagtcaaagatttcgatt 4725897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 142436 - 142350
Alignment:
Q  149 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaacta 235  Q
    ||||||||| ||| ||||||||||| |||   ||| ||||||||||||||| ||| ||||||||||||  |||||||| ||||||||    
T  142436 attttataaaaaaatcaaatatttcaatttctgatacattgattacacataattttatgataagttacattttaaagggcttaacta 142350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 22871913 - 22871967
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatt 171  Q
    |||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  22871913 gacactctttaaggattctaaaagaagaaaatattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 3758194 - 3758279
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    |||||||||||| ||| ||||| ||| ||||||| | ||| ||||||||||||||||||| || ||||||||| || |||| ||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattttcaatgcattgaatatacatttttt 3758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 26663642 - 26663714
Alignment:
Q  131 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26663642 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26663714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 26935237 - 26935309
Alignment:
Q  131 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26935237 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 14475133 - 14474998
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 196  Q
    |||||||| ||||| |||| | | ||||| ||  ||| |||||||| |||||||| ||||| || |||||||||||| |||   ||||| |||||||||     
T  14475133 ttgttaacaagtgcttccggggctctcttcaagcattttaaaagaagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacat 14475034  T
Q  197 atattttcatgataagttactatttaaaggccttaa 232  Q
    | |||||||  | |||||||||||| |||| |||||    
T  14475033 aaattttcaaaaaaagttactatttgaaggtcttaa 14474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 27650944 - 27650866
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    ||||||||||| ||| ||||||  |||||||||||| |||| |||| || |||||||| ||||| ||||| ||||||||    
T  27650944 gtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattt 27650866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 37976444 - 37976497
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    |||||||||| |||||||||||| ||||||||| |||| ||| |||||||||||    
T  37976444 actctttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttc 37976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 12933327 - 12933381
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 172  Q
    |||||||| || ||||  |||| ||||||||||||||||| ||||||||||||||    
T  12933327 acactcttcaacgatttcaaaataataaattattttataagaaagtcaaatattt 12933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 24241256 - 24241210
Alignment:
Q  131 attctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    |||||||||||| |||||||||||  | |||||||||||||||||||    
T  24241256 attctaaaagaaaaaattattttaataaaaagtcaaatatttcgatt 24241210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 24241096 - 24241039
Alignment:
Q  146 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    |||||||||||| ||||||||||||||| ||| |  || ||||||||| |||||||||    
T  24241096 attattttataaaaaagtcaaatatttcaatttttaatacattgattatacatatttt 24241039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 43145883 - 43145943
Alignment:
Q  181 gatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    ||||||||||||||| | |||||||  | || |||||||||||||| ||||| ||||||||    
T  43145883 gatgcattgattacataaattttcaaaaaaaattactatttaaaggtcttaaatagtgcct 43145943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 8789826 - 8789973
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||| | | || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||   |||||||||||||    
T  8789826 gtcttgttaacgagtactttcgggacactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgatta 8789925  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcct 241  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||||||    
T  8789926 cacatattttcatgttaagttaccctttaaagaccttaaccagtgcct 8789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 44941216 - 44941072
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||| ||| ||| |||||| ||||| ||| |||||||||  ||||||||||||||    
T  44941216 gtcttgttaacgagtgcc-ctgagacactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgatta 44941118  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    || |||||||| |||||| |||| ||||||||||||||||||||||    
T  44941117 catatattttcctgataaattaccatttaaaggccttaactagtgc 44941072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 20683133 - 20682990
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||  ||||||||| ||| |||||||||||||||  ||||||||||||||    
T  20683133 gtcttgttaacgagtgcccccgggacactctttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgatgcattgatta 20683034  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagt 237  Q
    |||||||||| |||||||||||| || ||||  | |||||||||    
T  20683033 cacatatttttatgataagttaccatataaaaactttaactagt 20682990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 8773784 - 8773670
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||||||||| ||||||||      
T  8773784 cactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgttaagttaccc 8773685  T
Q  219 tttaaaggccttaac 233  Q
    ||||||| |||||||    
T  8773684 tttaaagaccttaac 8773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 4238438 - 4238341
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 215  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4238438 gacactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcat-ataagtta 4238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 18053130 - 18053008
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 216  Q
    |||||||||||| ||||  ||||||| |||||||||||||| |||||||||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||    
T  18053130 gacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgattatacatactttcatgataaattac 18053031  T
Q  217 tatttaaaggccttaactagtgcc 240  Q
      ||||||||||||||||| ||||    
T  18053030 -ctttaaaggccttaactaatgcc 18053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 42945125 - 42945012
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||| ||||| |||| |||||||| | |||||||||| | ||| |||||||||||||||  |  ||||||||||||||||||||| ||||||| ||||||    
T  42945125 cactttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttccagtgcattgattacacatatttttatgataatttacta 42945026  T
Q  219 tttaaaggccttaa 232  Q
    ||||||||||||||    
T  42945025 tttaaaggccttaa 42945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 205
Target Start/End: Complemental strand, 6761862 - 6761751
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||||| |||||| ||||||||||  |||| |||||||||||| ||| ||||| ||||||||||||||| |||  | ||||||||||||    
T  6761862 gtcttgttaacaagtgcttccgaggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgatta 6761763  T
Q  194 cacatattttca 205  Q
    || | |||||||    
T  6761762 cataaattttca 6761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 2393148 - 2393038
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 221  Q
    ||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |  |||||||| ||||| |||||||   |||||||||| |    
T  2393148 tctttaaggattctaaaagaagaaattaatttataaaaaagtcaaatattttgattctcaagacattgatttcacatgttttcatacaaagttactatat 2393049  T
Q  222 aaaggccttaa 232  Q
    ||||| |||||    
T  2393048 aaaggtcttaa 2393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 233
Target Start/End: Complemental strand, 34546379 - 34546265
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||| |||||||   ||||||||||||||||| |||||||||||||||||  |    
T  34546379 cactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattacacacattttcatgataagttatca 34546280  T
Q  219 tttaaaggccttaac 233  Q
    ||||| || ||||||    
T  34546279 tttaatggtcttaac 34546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 42966938 - 42967066
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttc 204  Q
    |||||||||||||||||||||||  || ||||||||| ||||||||| |||| ||| || ||||||||| |||| |||||||||||||||| | ||||||    
T  42966938 agtgcctccgagacactctttaagaatactaaaagaagaaattatttcataaaaaaagttaaatatttcaattcccgatgcattgattacataaattttc 42967037  T
Q  205 atgataag-ttactatttaaaggccttaa 232  Q
    |  | ||  |||||||||||||| |||||    
T  42967038 aaaaaaaaattactatttaaaggtcttaa 42967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 1070568 - 1070639
Alignment:
Q  132 ttctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttc 204  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||    
T  1070568 ttctaaaagaatatattattttataataaagtaaaatattttgattttcaatg-attgattacacatattttc 1070639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 5962101 - 5961954
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa-taaattattttat-aataaagtcaaatatttcgattctcgatgcattgat 191  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||| ||||  || || ||| | ||||||||| |||  | ||||||||||    
T  5962101 gtcttgttaacgagtgcctccgagacactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcattgat 5962002  T
Q  192 tacacatattttcatgataagttactatttaaaggccttaactagtgc 239  Q
    |||| | |||||||  |  |||||||||||||||| ||||| ||||||    
T  5962001 tacataaattttcaaaaacagttactatttaaaggtcttaaatagtgc 5961954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 208
Target Start/End: Original strand, 3882586 - 3882700
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||||||  || | ||||||||||  ||||||||| ||  ||||||| | ||| || ||||||||||||| || || ||||||||||||    
T  3882586 gtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatta 3882685  T
Q  194 cacatattttcatga 208  Q
    |||| ||||||||||    
T  3882686 cacacattttcatga 3882700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 433643 - 433551
Alignment:
Q  97 ttgttaaccagtgcctccgag-acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 189  Q
    |||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||| | |||||||||    
T  433643 ttgttaacgagtgcc-ccgaggacactctttaaggattccaaaagaataaattaatttataaaaaagttaaatattttgatttttgatgcattg 433551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 8898913 - 8898861
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatat 170  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||||||    
T  8898913 acaccctttaatgattctaaaataagaaattattttataataaagtcaaatat 8898861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 18227092 - 18227204
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||| |||||  |||||||||||| ||| ||||| ||  ||||||| |  |  ||||||||||||||||||| || ||||||||||||    
T  18227092 gtcttgttaacgagtgtctccggaacactctttaaacattataaaataagtaattattcttcataaaagtcaaatatttcgattttcaatgcattgatta 18227191  T
Q  194 cacatattttcat 206  Q
     | | ||||||||    
T  18227192 aatacattttcat 18227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 2826066 - 2825983
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    |||||||||  || |||||| || |||||||||| ||| ||||| |||||||||||||  | |||||||||||||||| |||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttt 2825983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 13442703 - 13442636
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 173  Q
    |||||||||||   ||||||||||||||| |||||||||||||||||||| || ||||| |||||||||    
T  13442703 agtgcctccgaagtactctttaaagattc-aaaagaataaattattttataaaaaaagttaaatatttc 13442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 35228732 - 35228816
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    ||||||| ||||  ||||||| |||||||||| ||| ||  |||||||||||||||    ||||||| |||||||||||||||||    
T  35228732 tctttaaggatttcaaaagaagaaattattttctaaaaagatcaaatatttcgatttctaatgcatttattacacatattttcat 35228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 3199599 - 3199541
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||||||||  ||||||||| || |||||||||||||| ||| |||||||||| ||||    
T  3199599 cactctttaataattctaaaataagaaattattttataaaaaattcaaatattttgatt 3199541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 7271769 - 7271880
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaa----gtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 212  Q
    |||||||||||| |||||||||| || ||| ||| |||||| |||    |||||||||||  |||  | |||||||||||||| |||||||||| | |||    
T  7271769 gacactctttaaggattctaaaaaaagaaactatcttataaaaaaaaaagtcaaatatttttatttccaatgcattgattacatatattttcataaaaag 7271868  T
Q  213 ttactatttaaa 224  Q
    |||  |||||||    
T  7271869 ttatcatttaaa 7271880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 14102435 - 14102297
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 193  Q
    |||||||||| ||||||||||   ||||||||||| || | |||| || ||||||||| | || ||| || |||||||||||||  | || |||||||||    
T  14102435 tcttgttaacgagtgcctccggagcactctttaaacatgccaaaataagaaattatttaaaaaaaaaagttaaatatttcgatttccaatacattgatta 14102336  T
Q  194 cacatattttcatgataagttactatttaaaggccttaa 232  Q
    ||||  ||||||| |  |||||||| ||| || ||||||    
T  14102335 cacactttttcataaatagttactacttatagtccttaa 14102297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 31448400 - 31448315
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    ||||||||||||||||   |||||| |||||||||||||| ||| | ||| |||| ||||  |||| |||| ||||| ||||||||    
T  31448400 acactctttaaagatttctaaagaagaaattattttataaaaaatttaaaaattttgatttccgatacattaattactcatatttt 31448315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 45212057 - 45212110
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 177  Q
    ||||| ||||||||||  |||||||||||||||| ||| |||||||||| ||||    
T  45212057 tttaaggattctaaaaagataaattattttataaaaaaatcaaatattttgatt 45212110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 33276005 - 33275918
Alignment:
Q  118 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||||||||||  ||||||||| || |||||||||| ||| ||||| ||||||||| ||| || || ||| || |||||| ||||||||    
T  33276005 acactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaatacataga-tacacacattttcat 33275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 30413030 - 30412910
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    ||||||||| ||||  ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||    
T  30413030 actctttaaggatttcaaaagaagaaactattttatgataaagtcaaatatttcgattcccgatgcattgattatacatattttcgtgataaattactat 30412931  T
Q  220 ttaaaggccttaactagtgcc 240  Q
    |||||||||||||| ||||||    
T  30412930 ttaaaggccttaaccagtgcc 30412910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 8170001 - 8170147
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||| |  |||  ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||  |||| |||||||||    
T  8170001 gtcttgttaacaagtactcccggaacactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgatta 8170100  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
     |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  8170101 tacatatgttcatgataagttactttttaaagaccttaactagtgcc 8170147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 48137789 - 48137899
Alignment:
Q  130 gattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 229  Q
    ||||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||| || |    
T  48137789 gattccaaaagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattacacatatttttatgataaattactatttaaaagcat 48137888  T
Q  230 taactagtgcc 240  Q
    |||||||||||    
T  48137889 taactagtgcc 48137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 42493703 - 42493798
Alignment:
Q  119 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagt 213  Q
    |||||||||| ||||| ||||||| |||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42493703 cactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttcatgataagt 42493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 225
Target Start/End: Original strand, 47507580 - 47507711
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||| ||||| | |||||||||| ||||||||||||| |||| ||||||||| ||| ||||| ||||| |||  ||||| ||||||||    
T  47507580 gtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgatta 47507679  T
Q  194 cacatattttcatgataagttactatttaaag 225  Q
    ||||| ||||||||| ||||||| ||||||||    
T  47507680 cacattttttcatgagaagttaccatttaaag 47507711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 38452146 - 38452283
Alignment:
Q  98 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 197  Q
    ||||||| |||||| |||| ||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||| |||  |||||||||| |||||||    
T  38452146 tgttaacgagtgcccccga-acattctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacaca 38452244  T
Q  198 tattttcatgataagttactatttaaaggccttaactag 236  Q
    ||||||||| |||| |||   ||||||||||||||||||    
T  38452245 tattttcataataaattatcttttaaaggccttaactag 38452283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 2964049 - 2964146
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 221  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattacacatatttttatgataagttactattt 2964146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 16878677 - 16878809
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    |||||||||||  |||  |||| |||||||||||||||||| | ||  | ||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  16878677 gtcttgttaacaggtgtttccgggacactctttaaagattcaataaagagaaattatttcataaaaaagttaaatatttcgattctcaatgcattgatta 16878776  T
Q  194 cacatattttcatgataagttactatttaaagg 226  Q
    || ||||||| |||  |||||||||||||||||    
T  16878777 caaatatttttatgcaaagttactatttaaagg 16878809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 44391537 - 44391426
Alignment:
Q  121 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  44391537 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 44391439  T
Q  220 ttaaaggccttaa 232  Q
    ||||||| |||||    
T  44391438 ttaaaggtcttaa 44391426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 46684626 - 46684550
Alignment:
Q  160 aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactag 236  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  46684626 aagtcaaatatttcgattttcgacgcattgattacatatattttcatgataaattaccatttaaaggccttaactag 46684550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 5248088 - 5248179
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatga 208  Q
    |||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  5248088 gacattctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttatga 5248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 2741168 - 2741260
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 211  Q
    |||||||||| |||| |||||||| |||||||||||| | ||| |||||||||| ||||  ||||||||||||||||||||||||||| ||||    
T  2741168 cactctttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgatgcattgattacacatattttcataataa 2741260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 15034911 - 15034793
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gattacacatattttcatgataagtta 215  Q
    |||||||||||| ||||| || | || ||| |||||||||| ||||||||||||||||||   | ||||||| |||||||| ||||||||| ||||||||    
T  15034911 gacactctttaaggattccaagaaaagaaaatattttataa-aaagtcaaatatttcgatatccaatgcatttgattacacgtattttcataataagtta 15034813  T
Q  216 ctatttaaaggccttaacta 235  Q
    |  |||||||||||||||||    
T  15034812 ccttttaaaggccttaacta 15034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 43670409 - 43670517
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 221  Q
    |||||||||||| |||| ||| |||| ||||||||| ||| ||||| |||| |||| |||||||| |||||||| || |||| ||||||| |||| ||||    
T  43670409 tctttaaagattttaaatgaagaaataattttataaaaaaatcaaagattttgattttcgatgcactgattacatatgtttttatgataaattaccattt 43670508  T
Q  222 aaaggcctt 230  Q
    |||| ||||    
T  43670509 aaagacctt 43670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 47305592 - 47305516
Alignment:
Q  165 aaatatttcga-ttctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    ||||||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  47305592 aaatatttcgaattttcgatccatagattacacatattttcatgataagttaccatttaaacaccttaactagtgcc 47305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 676488 - 676400
Alignment:
Q  114 cgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    |||||||||||||||| ||||||||| ||  ||||||||  ||| ||||| ||||||||||||| |  ||||||||||||||||||||||    
T  676488 cgagacactctttaaacattctaaaataagtaattatttattaa-aaagttaaatatttcgattttaaatgcattgattacacatatttt 676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 37352535 - 37352436
Alignment:
Q  106 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 205  Q
    ||||||||||||||| ||||||| ||||| |||| || ||||||||  || | ||||||||||||||| |||  | ||||||| |||||||| |||||||    
T  37352535 agtgcctccgagacattctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttca 37352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 33887971 - 33887887
Alignment:
Q  111 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 195  Q
    ||||||||||||||||||  |||| |||| ||  ||||||| | ||| ||||||||||||||| ||| || ||||||||||||||    
T  33887971 ctccgagacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattaca 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 36015141 - 36015002
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| | || ||||| |||| ||||||| ||||  |||| || |||||||||||||| ||| |||||||| || ||| || ||  ||||||||    
T  36015141 gtcttgttaacgaatgtctccgggacattctttaaggatttcaaaaaaagaaattattttataaaaaaatcaaatatgtcaattttcaatttattgatta 36015042  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtg 238  Q
    ||| ||||||     ||||||||  ||||||| ||||||||||||    
T  36015041 cacgtatttt-----taagttaccttttaaagaccttaactagtg 36015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 36285887 - 36285774
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||| ||| |||||||| |||  ||||||||| |||  |||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||      
T  36285887 actctttaaaaattttaaaagaagaaagcattttataaaaaaaatcaaatattttgatttccgatacattgattaca--tatttttatgataagttacat 36285790  T
Q  219 tttaaaggccttaact 234  Q
    |||||||| |||||||    
T  36285789 tttaaaggacttaact 36285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 177
Target Start/End: Complemental strand, 45375483 - 45375399
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaa-ttattttataataaagtcaaatatttcgatt 177  Q
    ||||| ||||| |||||||||| | |||||||||| ||||||||||||| ||| |||| |||||| ||||| |||||||| ||||    
T  45375483 gtcttattaacgagtgcctccggggcactctttaaggattctaaaagaagaaacttatgttataaaaaagttaaatattttgatt 45375399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 15995924 - 15995971
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||    
T  15995924 aaagttaaatatttcgattttcaatgcattgattacacatattttcat 15995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 35754017 - 35754126
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 196  Q
    |||| ||| |||| ||| || |||||||||||  |||  |||| || |||||||||||||| | | |||| |||||||||| || ||||||| |||||||    
T  35754017 ttgtcaacgagtgtctctgaaacactctttaagaatttcaaaaaaagaaattattttataaaataatcaagtatttcgattttcaatgcattaattacac 35754116  T
Q  197 atattttcat 206  Q
    || |||||||    
T  35754117 atgttttcat 35754126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 44495238 - 44495314
Alignment:
Q  146 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattta 222  Q
    |||||||||||| ||| | ||||||||||||| |  || ||||||||||||||||||| || | |||||| ||||||    
T  44495238 attattttataaaaaatttaaatatttcgatttttaattcattgattacacatatttttataacaagttattattta 44495314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 14574768 - 14574815
Alignment:
Q  159 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    ||||| ||||| ||||||| || |||||||||||||||||||||||||    
T  14574768 aaagttaaatacttcgattttcaatgcattgattacacatattttcat 14574815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 35599944 - 35599837
Alignment:
Q  88 ttaattgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcat 187  Q
    ||||| ||||||||||| ||||||||||||| |||||||||| || |||||  |  |||||||| | ||| ||| ||||||| ||| | | || ||||||    
T  35599944 ttaatggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcat 35599845  T
Q  188 tgattaca 195  Q
    ||| ||||    
T  35599844 tgaataca 35599837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31477085 - 31477175
Alignment:
Q  117 gacactctttaaagattctaaaagaat-aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 206  Q
    |||||| ||||| |||||||||| ||  |||||||| ||||| || |||||| |  | |||| || |||||||||||||||||||||||||    
T  31477085 gacactatttaaggattctaaaaaaaagaaattattgtataaaaacgtcaaaaaaattgattttcaatgcattgattacacatattttcat 31477175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 10032058 - 10031945
Alignment:
Q  93 tgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 192  Q
    ||||| |||||| |||||| ||| ||||||||||||  |||| ||||  |  ||||||||| | | ||||| |||| ||||||||  | |||||||||||    
T  10032058 tgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgatt 10031959  T
Q  193 acacatattttcat 206  Q
    |||||  |||||||    
T  10031958 acacactttttcat 10031945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 25120271 - 25120218
Alignment:
Q  116 agacactctttaaagattctaaaagaataaattattttataataaagtcaaata 169  Q
    ||||||||||||||||||  |||  ||||||||||||| ||| |||||||||||    
T  25120271 agacactctttaaagatttcaaattaataaattattttttaaaaaagtcaaata 25120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 27359398 - 27359466
Alignment:
Q  165 aaatatttcgattctcgatgcattgattacacatattttcat-gataagttactatttaaaggccttaa 232  Q
    |||||||||||||  | ||||||||||||||| | |||||||  | ||||||||||||||||| |||||    
T  27359398 aaatatttcgatttccaatgcattgattacacttgttttcataaaaaagttactatttaaaggtcttaa 27359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 31206280 - 31206426
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||| ||  ||||  ||||||||| ||||| ||||| | |||||||||||||| ||| |||||||||| ||||  ||||||||||||||    
T  31206280 gtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatta 31206379  T
Q  194 cacatattttcatgataagttactatttaaaggccttaactagtgcc 240  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  31206380 cacatatttttatgataaattactatttaaaggccttaactaatgcc 31206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 38956884 - 38956992
Alignment:
Q  124 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 223  Q
    ||||| ||||||||||||   ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  38956884 tttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagttatcatttaa 38956983  T
Q  224 aggccttaa 232  Q
    || ||||||    
T  38956984 agaccttaa 38956992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 5217869 - 5217747
Alignment:
Q  117 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 216  Q
    |||||||||||| ||||| ||||  |||||| ||||||||| |||||||||||||||||||  ||||| |||||||||||||||||| ||||||| ||||    
T  5217869 gacactctttaaggattcaaaaa--ataaatgattttataaaaaagtcaaatatttcgatttccgatgtattgattacacatatttttatgataaattac 5217772  T
Q  217 tatttaaaggccttaactagtgcct 241  Q
     || |||||  ||||||||||||||    
T  5217771 catataaagatcttaactagtgcct 5217747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 45368834 - 45368729
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| ||||||||| ||| |||||||| |||||| |||||||||||||||||||||| |    
T  45368834 cactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgattatacatattttcatgataagttacca 45368735  T
Q  219 tttaaa 224  Q
    ||||||    
T  45368734 tttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 5020162 - 5020051
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |||  |||| ||||||||||||  |||||||||| ||||||| ||    
T  5020162 actctttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatacattgattacac--attttcatgacaagttaccat 5020065  T
Q  220 ttaaaggccttaac 233  Q
    ||||||||||||||    
T  5020064 ttaaaggccttaac 5020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 232
Target Start/End: Complemental strand, 20169827 - 20169716
Alignment:
Q  121 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 219  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  20169827 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 20169729  T
Q  220 ttaaaggccttaa 232  Q
    ||||||| |||||    
T  20169728 ttaaaggtcttaa 20169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 9632898 - 9633040
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa--taaattattttataataaagtcaaatatttcgattctcgatgcattgat 191  Q
    ||||||||||| |||| ||||| | |||||||||||||||  |||| ||  ||||  ||| || || |||||||||||||| ||||   |||||||||||    
T  9632898 gtcttgttaacaagtgtctccgggtcactctttaaagatttcaaaaaaaaataaaaaattataaaa-aaagtcaaatattttgatttcagatgcattgat 9632996  T
Q  192 tacacatattttcatgataagttactatttaaaggccttaacta 235  Q
    ||||||||||||||| |||| || | |||||||| |||||||||    
T  9632997 tacacatattttcataataaattgccatttaaagaccttaacta 9633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 33636685 - 33636767
Alignment:
Q  91 attgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 173  Q
    |||||||| ||||| |||||  ||||||||||||||||  |||||||||| | ||||||||| |||| |||||||||| ||||    
T  33636685 attgtcttattaacgagtgcgcccgagacactctttaagcattctaaaaggagaaattatttcataaaaaagtcaaatgtttc 33636767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 39691247 - 39691121
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 196  Q
    |||||||| ||||||  |||||||||||||||  |||| | |  || |||||||| | ||| ||||||||||| ||| ||| || ||||||||| |||||    
T  39691247 ttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacac 39691148  T
Q  197 atattttcatgataagttactatttaa 223  Q
    | |||||||| | || |||||||||||    
T  39691147 aaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 7044442 - 7044329
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    |||||||||| ||||||||||||| |||||| ||||| | ||||||||| ||||||||| |  | || |||||||||| | |||||||   |||||| ||    
T  7044442 cactctttaaggattctaaaagaagaaattaatttattaaaaagtcaaacatttcgatttttaaggctttgattacacgtgttttcatacaaagttatta 7044343  T
Q  219 tttaaaggccttaa 232  Q
    | |||||| |||||    
T  7044342 tataaaggtcttaa 7044329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 24103187 - 24103087
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    |||| |||||| | ||| |||||||||||||||||  ||||||||| || |||||||||| | | || ||||||| ||||||||  ||||||| ||||||    
T  24103187 gtctcgttaacgattgcttccgagacactctttaagcattctaaaataagaaattatttttttaaaaggtcaaatgtttcgatttccgatgcaatgatta 24103088  T
Q  194 c 194  Q
    |    
T  24103087 c 24103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 39932813 - 39932721
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgca 186  Q
    ||||||||||| | | ||||||| |||||||||||| ||||||||||||  ||| |||  |||| ||||||||||||||| ||| || |||||    
T  39932813 gtcttgttaacgaattcctccgaaacactctttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgca 39932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 10335159 - 10335020
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 192  Q
    ||||||||||| ||||| | ||   ||||||||||  |||| |||||||||||||||| ||| || |||||||||||||   ||| || ||||||| |||    
T  10335159 gtcttgttaacgagtgcattcggagcactctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaatt 10335060  T
Q  193 acacatattttcatgataagttactatttaaaggccttaa 232  Q
    | ||| |||||||  | || |||| |||||||||||||||    
T  10335059 atacaaattttcacaaaaaattacaatttaaaggccttaa 10335020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 36819793 - 36819755
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataa 157  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36819793 cactctttaaagattctaaaagaaaaaattattttataa 36819755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 37564468 - 37564393
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaata 169  Q
    ||||||||||| |||||||| | ||||||||||||| || |||||  || |||||||| | ||| |||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaata 37564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 2124203 - 2124141
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataa 157  Q
    |||||||||| ||||   |||||||| |||||||| |||||||||||| |||||||| |||||    
T  2124203 tcttgttaacgagtgttcccgagacattctttaaacattctaaaagaagaaattattctataa 2124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 5968437 - 5968377
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattatttta 154  Q
    ||||||||||| |||||||||  | ||||||||||| ||||||||| ||  ||||||||||    
T  5968437 gtcttgttaacgagtgcctccagggcactctttaaacattctaaaacaagcaattatttta 5968377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 22209376 - 22209488
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||| ||||| |||| ||||| ||||||||||||  ||| ||||||||  |||||||   ||| ||||| |||||||| ||||  | |  |||||||||    
T  22209376 gtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgatta 22209475  T
Q  194 cacatattttcat 206  Q
    || ||||||||||    
T  22209476 catatattttcat 22209488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 12383129 - 12383008
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    ||||||||||  |||  ||||| | |||||||||||||| ||||| |||||||| ||||  |||||||||||||| ||||||||| ||||||| ||||||    
T  12383129 cactctttaagaatttcaaaaggagaaattattttataaaaaagttaaatattttgatttccgatgcattgattatacatatttttatgataaattacta 12383030  T
Q  219 tttaaaggccttaactagtgcc 240  Q
    |||||||| |||||||||||||    
T  12383029 tttaaaggacttaactagtgcc 12383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 16442075 - 16442188
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||| || |   ||||||||||||| |||||||   |||||||||    
T  16442075 cactctttaaagattctaaaagaataaattagtttataaaaaagtcaaacattttgattttcaaaatattgattacacatgttttcatacaaagttacta 16442174  T
Q  219 tttaaaggccttaa 232  Q
    | |||||| |||||    
T  16442175 tataaaggtcttaa 16442188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 8176324 - 8176419
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 217  Q
    ||||||| ||||||||||||| |||| | ||| ||| ||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  8176324 tctttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgatgcattaattacacatattttcataataagttact 8176419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 12307821 - 12307904
Alignment:
Q  120 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    ||||||||| ||||  ||||||| |||||||||||||| ||||||||||||||  ||| || || |||| ||||||||||||||    
T  12307821 actctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattacacatatttt 12307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 31702874 - 31702747
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| ||||  |||| | ||||||||||  |||  ||||||| |||||||||||||| ||||| || |||||  |||    ||||||||||||    
T  31702874 gtcttgttaacgagtg--tccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgatta 31702777  T
Q  194 cacatattttcatgataagttactatttaa 223  Q
    |||||||||| || | ||||||||||||||    
T  31702776 cacatatttttataaaaagttactatttaa 31702747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 7465451 - 7465558
Alignment:
Q  97 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 196  Q
    |||||||| |||||| ||| | |||| ||||| |||||| |||||| ||||| ||  |||| ||||||||||||||| |||  ||||||||||||||||     
T  7465451 ttgttaacgagtgcccccggg-cactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacat 7465549  T
Q  197 atattttca 205  Q
    | |||||||    
T  7465550 aaattttca 7465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 22695549 - 22695473
Alignment:
Q  163 tcaaatatttcgattctcgatgcattgattacacata-ttttcatgataagttactatttaaaggccttaactagtg 238  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| || | ||||||| ||||||| |||||||| ||||    
T  22695549 tcaaatatttcaattttcgatgcattgattacacatatttttaataaaaagttaccatttaaaagccttaacgagtg 22695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 22696071 - 22696000
Alignment:
Q  95 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaa 166  Q
    |||||||||| |||||||| ||  |||||||||| ||||| ||||||| |||||||||||||| ||| ||||    
T  22696071 tcttgttaacgagtgcctctgatgcactctttaaggattccaaaagaagaaattattttataaaaaaatcaa 22696000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 35241410 - 35241509
Alignment:
Q  123 ctttaaagattctaaaagaataaattattttataata-aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 221  Q
    |||||| |||| ||||| || |||||||||||||| | || | |||||||| ||||   ||||||||||||| ||||||||| |||||||||||| ||||    
T  35241410 ctttaaggattttaaaaaaagaaattattttataaaagaaattaaatattttgatttctgatgcattgattatacatatttttatgataagttaccattt 35241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 232
Target Start/End: Complemental strand, 6048381 - 6048268
Alignment:
Q  119 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 218  Q
    ||||||||||| |||||||||||| |||||| ||||||| ||||| ||| ||||  |||  | |   ||||||||||||| |||||||   |||||||||    
T  6048381 cactctttaaaaattctaaaagaagaaattaatttataaaaaagtgaaacattttaatttccaagatattgattacacatgttttcatacaaagttacta 6048282  T
Q  219 tttaaaggccttaa 232  Q
    | |||||| |||||    
T  6048281 tataaaggtcttaa 6048268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 26311807 - 26311889
Alignment:
Q  122 tctttaaagattctaaaagaataaattattttataataa-agtcaaatatttcgattctcgatgcattgattacacatatttt 203  Q
    ||||||| |||||| ||||||||||||| ||||||| ||  || |||||||| |||| || || |||| ||||||||||||||    
T  26311807 tctttaaggattctgaaagaataaattaatttataaaaatggttaaatattttgattttcaatacattaattacacatatttt 26311889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 195
Target Start/End: Original strand, 30509286 - 30509387
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||||||| |||| |||||  |||||||||||  || | |||| ||  ||||||| | ||| ||| ||||| ||||||||| || ||||||||||||    
T  30509286 gtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgatta 30509385  T
Q  194 ca 195  Q
    ||    
T  30509386 ca 30509387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 18245 - 18144
Alignment:
Q  94 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 193  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  18245 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 18146  T
Q  194 ca 195  Q
    ||    
T  18145 ca 18144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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