View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_242 (Length: 250)
Name: NF10261A_low_242
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_242 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 434316 - 434147
Alignment:
| Q |
70 |
ttccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtc |
169 |
Q |
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| T |
434316 |
ttccctcagggagctttaatctcctggcaaaagtggaattttcttccacttgacccaagatgacagatttatgattaagacagtcaaaaaatccgaagtc |
434217 |
T |
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| Q |
170 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
239 |
Q |
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| T |
434216 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtataatgtacatct |
434147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 32938459 - 32938626
Alignment:
| Q |
72 |
ccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaa |
171 |
Q |
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| T |
32938459 |
ccctcagggagctttcatctcctggcaaaagtggaagcttcttctacttgacccaagatgatagatttatgataaagacggtgaaaaaatccgaagtcaa |
32938558 |
T |
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| Q |
172 |
ggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
239 |
Q |
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| T |
32938559 |
ggtttgtttttggttgttaaattgaaaacatttttccatgtttgttcaaactagtatgacgtacatct |
32938626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 434424 - 434350
Alignment:
| Q |
1 |
ggtcagttctttttcataagtataatttaagtcnnnnnnnnn--aagttcttttacaattgaggaagccatttcc |
73 |
Q |
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| T |
434424 |
ggtcagttctttttcctaagtataatttaagtcttttttttttaaagttcttttacaattgaggaagccatttcc |
434350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 24524401 - 24524459
Alignment:
| Q |
117 |
acttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaaggtt |
175 |
Q |
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| T |
24524401 |
acttgacccaagatgacagattcatgattaagacagtgaagaaatctgaagtcaaggtt |
24524459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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