View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_244 (Length: 250)
Name: NF10261A_low_244
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_244 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 43365530 - 43365300
Alignment:
| Q |
1 |
gggagagaaatttgcgactccatatacagtgcgtgttccaaggaaatgcacccccaaatgctacgagggtcgtgttttaccagtgctgatcaagaaacgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365530 |
gggagagaaatttgcgactccatatacagtgcgtgttccaaggaaatgcacccccaaatgctacgagggtcgtgttttaccagtgctgatcaagaaacgt |
43365431 |
T |
|
| Q |
101 |
gtaagtgtttcattaaaggtccctaattggaagctttcatcaaaattgtgtgcctcaattttattaataaaatttgtggttccaacattgtaagttaggt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43365430 |
gtaagtgtttaattaaaggtccctaattggaagctttcatcaaaattgtgtgcctcaattttattaataaaatttgtggttccaacattgtaagttaggt |
43365331 |
T |
|
| Q |
201 |
gtccaacatgctagttattgttgtgttgatg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
43365330 |
gtccaacatgctagttattgttgtgttgatg |
43365300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University