View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_248 (Length: 250)

Name: NF10261A_low_248
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_248
NF10261A_low_248
[»] chr6 (4 HSPs)
chr6 (16-250)||(34723484-34723718)
chr6 (16-246)||(34602208-34602438)
chr6 (74-244)||(2542169-2542339)
chr6 (33-103)||(32199375-32199445)
[»] chr4 (5 HSPs)
chr4 (30-142)||(13155359-13155471)
chr4 (29-103)||(8811484-8811558)
chr4 (29-71)||(33099472-33099514)
chr4 (183-241)||(12777430-12777488)
chr4 (29-103)||(54873382-54873456)
[»] chr7 (2 HSPs)
chr7 (30-165)||(27852279-27852414)
chr7 (28-99)||(8773012-8773083)
[»] chr5 (2 HSPs)
chr5 (180-242)||(8251172-8251234)
chr5 (28-106)||(38359635-38359713)
[»] chr2 (2 HSPs)
chr2 (28-99)||(28398451-28398522)
chr2 (74-142)||(24737237-24737305)
[»] chr1 (2 HSPs)
chr1 (29-100)||(25527584-25527655)
chr1 (180-244)||(25527440-25527504)
[»] chr3 (2 HSPs)
chr3 (29-99)||(6891666-6891736)
chr3 (29-103)||(6923424-6923498)
[»] scaffold0225 (1 HSPs)
scaffold0225 (78-135)||(3942-3999)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 34723484 - 34723718
Alignment:
Q  16 tggacatcacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723484 tggacataacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 34723583  T
Q  116 tgaaaacaactcctcagaaaaaccatgaaggtcttcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723584 tgaaaacaactcctcagaaaaaccatgaaggtcctcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 34723683  T
Q  216 aaagacaaaatttttgcaggtaaattttgtgtatg 250  Q
    |||||||||||||||||||||||||||||||||||    
T  34723684 aaagacaaaatttttgcaggtaaattttgtgtatg 34723718  T

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Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 34602208 - 34602438
Alignment:
Q  16 tggacatcacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602208 tggacataacgcaatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataa 34602307  T
Q  116 tgaaaacaactcctcagaaaaaccatgaaggtcttcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 215  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34602308 tgaaaacaactcctcagaaaaaccatgaaggtcctcgacctcctcctccagtaaatcaactgattcaccttttaaatcaatagctgaaattttatctttc 34602407  T
Q  216 aaagacaaaatttttgcaggtaaattttgtg 246  Q
    |||||||||||||||||||||||||||||||    
T  34602408 aaagacaaaatttttgcaggtaaattttgtg 34602438  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 2542169 - 2542339
Alignment:
Q  74 cctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcctcagaaaaaccatgaaggtcttcgacctcctcctccagtaaatca 173  Q
    |||||| ||||||||||||||||||  ||| |  || ||||| || |||||||||||| | || |||||||| || || |||||||| ||   |||| |     
T  2542169 cctcgactgttgccaacaaatactattatttatccgagataaagagaacaactcctcatataacccatgaagctcctcaacctcctcatcatctaaaact 2542268  T
Q  174 actgattcaccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaattttg 244  Q
     | || || ||||| | ||||| ||||| ||||||||| |||| ||||||||||||||| |||||||||||    
T  2542269 gcagactctcctttcatatcaaaagctgtaattttatccttcatagacaaaatttttgctggtaaattttg 2542339  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 32199375 - 32199445
Alignment:
Q  33 aaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 103  Q
    |||||||| ||||||||||| | ||| | ||||||||| || || || |||||||||||||||||||||||    
T  32199375 aaaaacttcgaatttgcatctccttccctcaaccattgaattctggactgttgccaacaaatactagaatt 32199445  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 13155471 - 13155359
Alignment:
Q  30 tgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcct 129  Q
    ||||| ||||| | ||| ||||||| |||||| |||||||||||||  || ||||||||||||||||||||||| |   | || || |||||||||||||    
T  13155471 tgaaagaacttagtattcgcatccccttcacgtaaccattgcatccgagactgttgccaacaaatactagaatttatctgagacaacgaaaacaactcct 13155372  T
Q  130 cagaaaaaccatg 142  Q
    | |||| ||||||    
T  13155371 cggaaacaccatg 13155359  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 8811558 - 8811484
Alignment:
Q  29 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 103  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||||  |  || ||||||||||||||||| |||||    
T  8811558 atgaaaaaactttgaattggcatccccttcacgcaaccactgcaatcgagactgttgccaacaaatacttgaatt 8811484  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 33099514 - 33099472
Alignment:
Q  29 atgaaaaaacttggaatttgcatccctttcacgcaaccattgc 71  Q
    |||||||||||||||||| |||||||||||||| |||||||||    
T  33099514 atgaaaaaacttggaattcgcatccctttcacgtaaccattgc 33099472  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 12777430 - 12777488
Alignment:
Q  183 ccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaatt 241  Q
    ||||| |||||||  || ||||||||||| |||| ||||||| ||||||||||||||||    
T  12777430 cctttgaaatcaaaggccgaaattttatccttcagagacaaattttttgcaggtaaatt 12777488  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 54873382 - 54873456
Alignment:
Q  29 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 103  Q
    |||||| || || ||||| ||||||| |||||  ||||||||||  |  ||||||||||||||||||||||||||    
T  54873382 atgaaagaatttagaattagcatccccttcacataaccattgcagacgagattgttgccaacaaatactagaatt 54873456  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 27852414 - 27852279
Alignment:
Q  30 tgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcct 129  Q
    ||||| ||||| || |||||||| | |||||| |||||||| | || ||| ||||||||||||||||| ||||| |  || ||||| ||||| |||||||    
T  27852414 tgaaagaacttagagtttgcatctccttcacgtaaccattgtaaccgcgactgttgccaacaaatacttgaattaatccgagataacgaaaataactcct 27852315  T
Q  130 cagaaaaaccatgaaggtcttcgacctcctcctcca 165  Q
    | ||||| | ||| |  ||||||| |||||||||||    
T  27852314 ctgaaaacctatgcatatcttcgatctcctcctcca 27852279  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 8773012 - 8773083
Alignment:
Q  28 aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag 99  Q
    |||||||| |||| ||||||||||| | |||||| | || |||  ||||||||||||||||||| |||||||    
T  8773012 aatgaaaatacttagaatttgcatcgccttcacgaagcctttgattcctcgattgttgccaacatatactag 8773083  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 8251172 - 8251234
Alignment:
Q  180 tcaccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaattt 242  Q
    ||||| || ||||||| || |||||||||||| ||||| ||||||||||||||||||||||||    
T  8251172 tcacccttcaaatcaaaagatgaaattttatcattcaacgacaaaatttttgcaggtaaattt 8251234  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 38359635 - 38359713
Alignment:
Q  28 aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaattcaa 106  Q
    |||||||| | || ||||||||||| | |||||  | ||||||  ||||||||||||||||||| ||||||| ||||||    
T  38359635 aatgaaaatatttagaatttgcatcgccttcactaagccattgattcctcgattgttgccaacatatactagtattcaa 38359713  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 28398522 - 28398451
Alignment:
Q  28 aatgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag 99  Q
    |||||||| |||| ||||||||||| | |||||| | ||||||  ||||||||||||||||||| |||||||    
T  28398522 aatgaaaatacttagaatttgcatcgccttcacgaagccattgattcctcgattgttgccaacatatactag 28398451  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 24737305 - 24737237
Alignment:
Q  74 cctcgattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcctcagaaaaaccatg 142  Q
    |||||| || |||||||||||||||||||| |  || ||||| ||||| |||||||| ||||| |||||    
T  24737305 cctcgactgctgccaacaaatactagaattaatccgagataacgaaaataactcctctgaaaacccatg 24737237  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 25527655 - 25527584
Alignment:
Q  29 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactaga 100  Q
    |||||||||||| |||||||| |||| |||||| ||||||||||| || || ||||||||||  ||||||||    
T  25527655 atgaaaaaactttgaatttgcttccccttcacgtaaccattgcattcttgactgttgccaacggatactaga 25527584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 25527504 - 25527440
Alignment:
Q  180 tcaccttttaaatcaatagctgaaattttatctttcaaagacaaaatttttgcaggtaaattttg 244  Q
    |||||||| | |||||| ||| ||||| |||| ||||||||  | ||||||||||||||||||||    
T  25527504 tcacctttaagatcaattgctaaaattctatccttcaaagatgatatttttgcaggtaaattttg 25527440  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 6891736 - 6891666
Alignment:
Q  29 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactag 99  Q
    ||||||||| |||||||| ||||||| |||||| |||||| |   ||  ||||||||||||||||||||||    
T  6891736 atgaaaaaaattggaattcgcatccccttcacgtaaccatcgatgccgggattgttgccaacaaatactag 6891666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 6923498 - 6923424
Alignment:
Q  29 atgaaaaaacttggaatttgcatccctttcacgcaaccattgcatcctcgattgttgccaacaaatactagaatt 103  Q
    |||||| || || ||||||||| ||| |||||  ||||||||||  |  ||||||||||||||||||||||||||    
T  6923498 atgaaagaaatttgaatttgcacccccttcacataaccattgcagacgtgattgttgccaacaaatactagaatt 6923424  T

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Target: scaffold0225 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 3999 - 3942
Alignment:
Q  78 gattgttgccaacaaatactagaattcaagcgcgataatgaaaacaactcctcagaaa 135  Q
    |||||||||||||||| ||||| |||||  || ||||| |||||||||||||| ||||    
T  3999 gattgttgccaacaaacactagcattcacacgagataacgaaaacaactcctctgaaa 3942  T

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