View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_255 (Length: 249)
Name: NF10261A_low_255
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_255 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 8966 - 9192
Alignment:
| Q |
5 |
gtcgaataatatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
8966 |
gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag |
9063 |
T |
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| Q |
105 |
caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga |
204 |
Q |
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||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
9064 |
caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga |
9162 |
T |
|
| Q |
205 |
attattagtaaccggttcctattctttttc |
234 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
9163 |
attattagtaaccggttcctattctttttc |
9192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 16420254 - 16420480
Alignment:
| Q |
5 |
gtcgaataatatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
16420254 |
gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag |
16420351 |
T |
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| Q |
105 |
caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga |
204 |
Q |
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||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
16420352 |
caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga |
16420450 |
T |
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| Q |
205 |
attattagtaaccggttcctattctttttc |
234 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
16420451 |
attattagtaaccggttcctattctttttc |
16420480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 5538515 - 5538285
Alignment:
| Q |
5 |
gtcgaataatatgtgccactagatattactagctagaatttattagagtaatatata--atcagattagcaagaaagtaggaaaacaaaaggaagcatag |
102 |
Q |
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|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
5538515 |
gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtaggaaaacaaaaggaagcatag |
5538416 |
T |
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| Q |
103 |
agcaaa-ggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtggg |
201 |
Q |
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|||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
5538415 |
agcaaaaggaagtgattg-cgtgtggaaataaacatcc-acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtggg |
5538318 |
T |
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| Q |
202 |
agaattattagtaaccggttcctattctttttc |
234 |
Q |
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|||||||||||||||| |||||||||| ||||| |
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| T |
5538317 |
agaattattagtaaccagttcctattccttttc |
5538285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 19932297 - 19932449
Alignment:
| Q |
42 |
atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatccca |
141 |
Q |
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|||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||| ||| |
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| T |
19932297 |
atttattaaagtaatatataataagattagcaataaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacat-cca |
19932395 |
T |
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| Q |
142 |
cgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt |
195 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
19932396 |
cgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt |
19932449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 42 - 195
Target Start/End: Original strand, 18901509 - 18901668
Alignment:
| Q |
42 |
atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacat---- |
137 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
18901509 |
atttattaaagtaatatataataagattagcaagaaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacattaaa |
18901608 |
T |
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| Q |
138 |
--cccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt |
195 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
18901609 |
catccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt |
18901668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 51784772 - 51784718
Alignment:
| Q |
141 |
acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt |
195 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
51784772 |
acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt |
51784718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 18901445 - 18901487
Alignment:
| Q |
12 |
aatatgtgccactagatattactagctagaatttattagagta |
54 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
18901445 |
aatatgtgacactagatattactagctagtatttattagagta |
18901487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 51784832 - 51784794
Alignment:
| Q |
42 |
atttattagagtaatatataatcagattagcaagaaagt |
80 |
Q |
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|||||||| ||||||||||||| |||||||||||||||| |
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| T |
51784832 |
atttattaaagtaatatataataagattagcaagaaagt |
51784794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 51784892 - 51784859
Alignment:
| Q |
12 |
aatatgtgccactagatattactagctagaattt |
45 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
51784892 |
aatatgtgccactagatattactagctagtattt |
51784859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 234
Target Start/End: Complemental strand, 37940512 - 37940333
Alignment:
| Q |
56 |
tatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaat |
155 |
Q |
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|||||||| ||||||||||||||||||| || ||||| ||||||||| ||||||| ||||| || |||||||||||||||| ||||||||||||||| |
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| T |
37940512 |
tatataataagattagcaagaaagtaggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatcc-acgtttcttcccaat |
37940414 |
T |
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| Q |
156 |
cccattttccactatgtcccatattgttaggaaataagttcgtgggagaattat--tagtaaccggttcctattctttttc |
234 |
Q |
| |
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| ||||||||||||||| ||||||| |||||||||||||| ||| | |||| || |||||||||||||||||||||| |
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| T |
37940413 |
ctcattttccactatgttccatatttttaggaaataagttagtgacaatgttattataataaccggttcctattctttttc |
37940333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 37940592 - 37940550
Alignment:
| Q |
12 |
aatatgtgccactagatattactagctagaatttattagagta |
54 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37940592 |
aatatgtgccactagatattactagctagtatttattagagta |
37940550 |
T |
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