View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_256 (Length: 249)

Name: NF10261A_low_256
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_256
NF10261A_low_256
[»] chr5 (5 HSPs)
chr5 (112-234)||(5805034-5805156)
chr5 (13-47)||(5805221-5805255)
chr5 (115-149)||(33122639-33122673)
chr5 (115-150)||(16870240-16870275)
chr5 (119-147)||(31738343-31738371)
[»] chr3 (1 HSPs)
chr3 (115-167)||(39022659-39022711)
[»] chr1 (2 HSPs)
chr1 (119-167)||(50597466-50597514)
chr1 (116-144)||(18376444-18376472)
[»] chr2 (3 HSPs)
chr2 (116-150)||(9557297-9557331)
chr2 (117-154)||(21372057-21372094)
chr2 (119-167)||(18953375-18953423)
[»] chr7 (1 HSPs)
chr7 (116-156)||(43881112-43881152)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 5805156 - 5805034
Alignment:
Q  112 aagtaggtttaaatatgattttagtctctgcaattatagcattatctggttttagtagtttctctttttgtttggatcatgaccctgcaaacttaaaaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5805156 aagtaggtttaaatatgattttagtctctgcaattatagcattatctggttttagtagtttctttttttgtttggatcatgaccctgcaaacttaaaaac 5805057  T
Q  212 cgttatttttagtctttgatgtc 234  Q
    | |||||||||||||||||||||    
T  5805056 ctttatttttagtctttgatgtc 5805034  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 5805255 - 5805221
Alignment:
Q  13 gggctggtgttgtcattactgctttagattggtaa 47  Q
    |||||||||||||||||||||||||||||||||||    
T  5805255 gggctggtgttgtcattactgctttagattggtaa 5805221  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 33122673 - 33122639
Alignment:
Q  115 taggtttaaatatgattttagtctctgcaattata 149  Q
    |||||||||||||||||||||||||||||||||||    
T  33122673 taggtttaaatatgattttagtctctgcaattata 33122639  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 16870275 - 16870240
Alignment:
Q  115 taggtttaaatatgattttagtctctgcaattatag 150  Q
    ||||||||||||||||||||||| ||||||||||||    
T  16870275 taggtttaaatatgattttagtccctgcaattatag 16870240  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 147
Target Start/End: Original strand, 31738343 - 31738371
Alignment:
Q  119 tttaaatatgattttagtctctgcaatta 147  Q
    |||||||||||||||||||||||||||||    
T  31738343 tttaaatatgattttagtctctgcaatta 31738371  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 39022659 - 39022711
Alignment:
Q  115 taggtttaaatatgattttagtctctgcaattatagcattatctggttttagt 167  Q
    |||||||| ||||||||||||||||||||||||| || || | ||||||||||    
T  39022659 taggtttagatatgattttagtctctgcaattatcgctttttttggttttagt 39022711  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 50597514 - 50597466
Alignment:
Q  119 tttaaatatgattttagtctctgcaattatagcattatctggttttagt 167  Q
    |||||||||||||||||||||| |||||||| |||| | ||||||||||    
T  50597514 tttaaatatgattttagtctctacaattataacattttttggttttagt 50597466  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 18376444 - 18376472
Alignment:
Q  116 aggtttaaatatgattttagtctctgcaa 144  Q
    |||||||||||||||||||||||||||||    
T  18376444 aggtttaaatatgattttagtctctgcaa 18376472  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 9557297 - 9557331
Alignment:
Q  116 aggtttaaatatgattttagtctctgcaattatag 150  Q
    |||||||||||||||| ||||||||||||||||||    
T  9557297 aggtttaaatatgattgtagtctctgcaattatag 9557331  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 21372057 - 21372094
Alignment:
Q  117 ggtttaaatatgattttagtctctgcaattatagcatt 154  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  21372057 ggtttaaatatgatcttagtcactgcaattatagcatt 21372094  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 18953375 - 18953423
Alignment:
Q  119 tttaaatatgattttagtctctgcaattatagcattatctggttttagt 167  Q
    |||||||||||||||||||| | ||| |||||| |||| ||||||||||    
T  18953375 tttaaatatgattttagtctatccaactatagcgttatttggttttagt 18953423  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 43881112 - 43881152
Alignment:
Q  116 aggtttaaatatgattttagtctctgcaattatagcattat 156  Q
    |||||||||||||||||||||   |||||||||||||||||    
T  43881112 aggtttaaatatgattttagttcttgcaattatagcattat 43881152  T

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