View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_266 (Length: 248)
Name: NF10261A_low_266
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_266 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 17006016 - 17006247
Alignment:
| Q |
16 |
tggacatcaagttcttgaataggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
115 |
Q |
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| T |
17006016 |
tggacatcaagttcttcaacaggttgaaaacataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacct |
17006115 |
T |
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| Q |
116 |
acacaaggtgaccctccaaaccagnnnnnnnngtacaggtaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaa |
215 |
Q |
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| T |
17006116 |
acacaaggtgaccctccaaaccagaaaaaaagg-acaggcaagaggcaatctacaaaagatgaccctccaatctagaagaagaaaagcatattctttgaa |
17006214 |
T |
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| Q |
216 |
cttccatattggaaggacaatcttctgcgtcat |
248 |
Q |
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| T |
17006215 |
cttccatattggaaggacaatcttttgcgtcat |
17006247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 47 - 248
Target Start/End: Complemental strand, 3050 - 2850
Alignment:
| Q |
47 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagnnnnnnn |
146 |
Q |
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| T |
3050 |
ataaaggtcatttttggtaaaaagccaaagaaagcagggttgggaaaaagaaaaggcaagaaacaacctacacaaggtgaccctccaaaccagaaaaaaa |
2951 |
T |
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| Q |
147 |
ngtacaggtaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgtc |
246 |
Q |
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| T |
2950 |
gg-acaggcaagaggcaatctacaaaagatgaccctccaatctggaagaagaaaagcatattctttgaacttccatattggaaggacaatcttctgcgtc |
2852 |
T |
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| Q |
247 |
at |
248 |
Q |
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|| |
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| T |
2851 |
at |
2850 |
T |
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