View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_270 (Length: 248)
Name: NF10261A_low_270
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_270 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 25240228 - 25239998
Alignment:
| Q |
1 |
tcacaacttatatagtcaattagactaactaactcataactgatctaactaatatgtaactagcttttacctctcaaagacaatatcaatcttgaactta |
100 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25240228 |
tcacgacttatatagtcaattagactaactaactcctaactgatctaactaatatgtaactagcttttacctctcaaagacaatatcaatcttgaactta |
25240129 |
T |
|
| Q |
101 |
cactacatagctaacaccttttcatttcattcatgagatggctttaaggtagtttaagtaattaaattcaaagagaatcaaatcttaataagatttgtct |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25240128 |
cactatatagctaacaccttttcatttcattcatgagatggctttaaggtagtttaagtaattaaattcaaagagaatcaaatcttaataagatttgtct |
25240029 |
T |
|
| Q |
201 |
atgtgtccttcttgtctatgtttgtctctct |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25240028 |
atgtgtccttcttgtctatgtttgtctctct |
25239998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 46992498 - 46992427
Alignment:
| Q |
7 |
cttatatagtcaattagactaactaactcataactgatctaactaatatgtaactagcttttacctctcaaa |
78 |
Q |
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||||||||||| ||||||| ||||||||| ||| ||||||||||||||||| || ||||||| ||||||| |
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| T |
46992498 |
cttatatagtcgattagaccaactaactcctaatcaatctaactaatatgtaattaacttttacatctcaaa |
46992427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 45680955 - 45681009
Alignment:
| Q |
8 |
ttatatagtcaattagactaactaactcataactgatctaactaatatgtaacta |
62 |
Q |
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||||||||||||||| | ||||| |||||||||| ||||||||| ||||||||| |
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| T |
45680955 |
ttatatagtcaattaaataaactagctcataactggtctaactaagatgtaacta |
45681009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 32625521 - 32625582
Alignment:
| Q |
8 |
ttatatagtcaattagactaactaactcataactgatctaactaatatgtaactagctttta |
69 |
Q |
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||||||||| |||||||| |||||| || ||||| || |||||||||||||| || |||||| |
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| T |
32625521 |
ttatatagtaaattagacaaactaattcctaactaatgtaactaatatgtaattaactttta |
32625582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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