View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_274 (Length: 247)
Name: NF10261A_low_274
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_274 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 35449812 - 35450052
Alignment:
| Q |
1 |
acatcattagagaaatagatgaagcacaagaaaaatgtgaaagacttctcttggaaaatctatgtttccatcaacaacaaaatgctccactttccggagt |
100 |
Q |
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| T |
35449812 |
acatcattagagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagt |
35449911 |
T |
|
| Q |
101 |
ttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35449912 |
ttcaagcattgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttca |
35450011 |
T |
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| Q |
201 |
ccaattattgatcaatcaatgattgaagtactaacaccaaa |
241 |
Q |
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| T |
35450012 |
ccaattattgatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 21010701 - 21010652
Alignment:
| Q |
9 |
agagaaatagatgaagcacaagaaaaatgtgaaagacttctcttggaaaa |
58 |
Q |
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||||||| ||||||||||||||||||||| |||||||| |||| ||||| |
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| T |
21010701 |
agagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaa |
21010652 |
T |
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