View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10261A_low_275 (Length: 247)

Name: NF10261A_low_275
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10261A_low_275
NF10261A_low_275
[»] chr3 (11 HSPs)
chr3 (17-238)||(3472912-3473132)
chr3 (20-238)||(18539220-18539439)
chr3 (105-238)||(3586037-3586170)
chr3 (20-151)||(39728849-39728979)
chr3 (17-148)||(18694761-18694891)
chr3 (17-148)||(18710280-18710410)
chr3 (143-238)||(39728206-39728300)
chr3 (111-196)||(15778350-15778435)
chr3 (22-122)||(19595713-19595813)
chr3 (68-148)||(3289496-3289575)
chr3 (192-234)||(3475798-3475840)
[»] scaffold0281 (1 HSPs)
scaffold0281 (17-238)||(561-782)
[»] chr4 (13 HSPs)
chr4 (20-238)||(11150311-11150528)
chr4 (17-238)||(15703423-15703643)
chr4 (22-234)||(25127291-25127503)
chr4 (20-239)||(23972830-23973049)
chr4 (20-239)||(14644608-14644826)
chr4 (17-236)||(4529772-4529989)
chr4 (109-234)||(19612930-19613056)
chr4 (21-148)||(18875038-18875161)
chr4 (97-154)||(20770653-20770710)
chr4 (132-225)||(12385288-12385382)
chr4 (198-235)||(9565036-9565073)
chr4 (108-148)||(15691335-15691376)
chr4 (104-148)||(9609818-9609862)
[»] chr7 (12 HSPs)
chr7 (20-238)||(11509746-11509963)
chr7 (20-238)||(18148734-18148951)
chr7 (20-234)||(22530124-22530338)
chr7 (20-237)||(34705766-34705977)
chr7 (17-196)||(21860584-21860761)
chr7 (36-141)||(13694170-13694274)
chr7 (90-185)||(3377724-3377820)
chr7 (120-196)||(21501014-21501091)
chr7 (123-179)||(6019275-6019331)
chr7 (126-174)||(13386703-13386750)
chr7 (126-174)||(19193977-19194024)
chr7 (128-179)||(21498551-21498603)
[»] chr5 (7 HSPs)
chr5 (19-239)||(39437067-39437286)
chr5 (112-185)||(29497057-29497130)
chr5 (126-174)||(27273153-27273200)
chr5 (126-173)||(19049409-19049455)
chr5 (109-140)||(32039818-32039849)
chr5 (200-238)||(29497017-29497055)
chr5 (206-238)||(889872-889904)
[»] chr8 (8 HSPs)
chr8 (20-238)||(9882232-9882450)
chr8 (11-235)||(40387489-40387712)
chr8 (114-239)||(1216744-1216869)
chr8 (65-238)||(42145381-42145554)
chr8 (109-148)||(17289632-17289671)
chr8 (20-74)||(4860588-4860638)
chr8 (17-97)||(42145299-42145378)
chr8 (212-241)||(17289761-17289790)
[»] chr1 (10 HSPs)
chr1 (20-235)||(52272638-52272852)
chr1 (64-235)||(12785022-12785199)
chr1 (109-235)||(41138001-41138127)
chr1 (109-239)||(9132516-9132647)
chr1 (109-239)||(23633267-23633398)
chr1 (37-148)||(89878-89988)
chr1 (17-114)||(18514938-18515036)
chr1 (64-148)||(18249887-18249972)
chr1 (113-164)||(19474425-19474476)
chr1 (17-56)||(18249965-18250004)
[»] chr6 (10 HSPs)
chr6 (64-238)||(19770139-19770312)
chr6 (20-238)||(19891695-19891910)
chr6 (20-239)||(9547622-9547840)
chr6 (103-238)||(22468810-22468952)
chr6 (127-196)||(12876106-12876176)
chr6 (109-148)||(19565277-19565316)
chr6 (109-148)||(20738946-20738985)
chr6 (17-71)||(22468752-22468806)
chr6 (125-162)||(17729507-17729544)
chr6 (198-238)||(19565160-19565200)
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-239)||(172466-172684)
[»] scaffold0024 (1 HSPs)
scaffold0024 (21-233)||(106674-106885)
[»] scaffold0323 (1 HSPs)
scaffold0323 (102-239)||(15300-15437)
[»] chr2 (12 HSPs)
chr2 (109-239)||(16092412-16092543)
chr2 (109-235)||(20264687-20264813)
chr2 (17-148)||(32625541-32625671)
chr2 (25-139)||(34892182-34892295)
chr2 (109-196)||(38991701-38991788)
chr2 (121-235)||(27401699-27401814)
chr2 (64-141)||(20178635-20178711)
chr2 (109-196)||(22385814-22385899)
chr2 (120-177)||(30613270-30613327)
chr2 (119-162)||(29890519-29890563)
chr2 (17-87)||(16092227-16092297)
chr2 (104-179)||(19467084-19467160)
[»] scaffold0498 (2 HSPs)
scaffold0498 (20-148)||(12012-12139)
scaffold0498 (144-234)||(9784-9875)
[»] scaffold0449 (1 HSPs)
scaffold0449 (154-238)||(344-429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (89-148)||(221835-221894)
[»] scaffold0043 (2 HSPs)
scaffold0043 (109-181)||(66678-66752)
scaffold0043 (19-87)||(66953-67021)
[»] scaffold0196 (1 HSPs)
scaffold0196 (120-148)||(22871-22899)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 3473132 - 3472912
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 116  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||| ||||||||    
T  3473132 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacatatcttc-aaatagacctacagttatgtatgcaatg 3473034  T
Q  117 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 216  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3473033 tctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 3472934  T
Q  217 accatgaatgcatgaacaccaa 238  Q
    ||||||||||||||||||||||    
T  3472933 accatgaatgcatgaacaccaa 3472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 18539439 - 18539220
Alignment:
Q  20 tcattgaatatcacatctttaaa-taattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 118  Q
    |||||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||    
T  18539439 tcattgaatatcgcatctttaaaatagttacagatcttaaagtattacatcttttaattacacatcttc-aaatatacctacagttatgtatgcaatgtc 18539341  T
Q  119 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactga 217  Q
     ||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  18539340 tctaactcgactctatatgcatgtggtaccggttttggattttagagttatcttactgatttatctcccatctttaaatcacatatttaaatcggactga 18539241  T
Q  218 ccatgaatgcatgaacaccaa 238  Q
     ||||||||||||||||||||    
T  18539240 acatgaatgcatgaacaccaa 18539220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 3586037 - 3586170
Alignment:
Q  105 atggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctt 204  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  3586037 atggatgcaatgtccctaactcgactctatatgcatgtagtaccgattttggatatcagagttatgttactgattaatctcgcatctttaaacacatctt 3586136  T
Q  205 taaatcggactgaccatgaatgcatgaacaccaa 238  Q
    ||||||||||||||||||||||||||||||||||    
T  3586137 taaatcggactgaccatgaatgcatgaacaccaa 3586170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 39728979 - 39728849
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  39728979 tcattgaatatcacatctttaaatacgtacacatcttaaaatatcacttcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 39728881  T
Q  120 ctaactcgactctatatgcatgtggtaccggt 151  Q
    ||||||||||||||||||||||||||||||||    
T  39728880 ctaactcgactctatatgcatgtggtaccggt 39728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 18694891 - 18694761
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 116  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18694891 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18694793  T
Q  117 tccctaactcgactctatatgcatgtggtacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  18694792 tccctaactcgactctatatgcatgtggtacc 18694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 18710410 - 18710280
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 116  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18710410 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18710312  T
Q  117 tccctaactcgactctatatgcatgtggtacc 148  Q
    ||||||||||||||||||||||||||||||||    
T  18710311 tccctaactcgactctatatgcatgtggtacc 18710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 39728300 - 39728206
Alignment:
Q  143 ggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 238  Q
    |||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728300 ggtaccggttttggatatcagagttatga-actggtttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 39728206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 15778435 - 15778350
Alignment:
Q  111 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 196  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  15778435 gcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcagagttatgttactgatttatcccccatctttaaa 15778350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 19595713 - 19595813
Alignment:
Q  22 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 121  Q
    |||||||||| |||||||||||| ||| |||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19595713 attgaatatcccatctttaaatagttatacatttttaaatatcacatcttttaattacacatcttcaaaatagacttgcagttatgtatgcaatgtccct 19595812  T
Q  122 a 122  Q
    |    
T  19595813 a 19595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 3289496 - 3289575
Alignment:
Q  68 tcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 148  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  3289496 tctttaaatcacacatcttc-aaatagacttgtagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 3289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 3475798 - 3475840
Alignment:
Q  192 ttaaacacatctttaaatcggactgaccatgaatgcatgaaca 234  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3475798 ttaaacacatctttaaatcggactgaccaagaatgcatgaaca 3475840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 561 - 782
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 116  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| |||||||| |||||||||| ||||||||    
T  561 acatcattgaatatcacatctttaaatatttacacatcttaaaatatcacatcttttaattatgcatcttc-aaatagacctgcagttatgtatgcaatg 659  T
Q  117 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggact 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  660 tctctaactcgactctatatgcatgtggtaccggttttggatatcagagatatgttactgatttatcccccatctttaaatcacatctttaaatcggact 759  T
Q  216 gaccatgaatgcatgaacaccaa 238  Q
    |||||||||||||||||||||||    
T  760 gaccatgaatgcatgaacaccaa 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 11150311 - 11150528
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  11150311 tcattgaatatcacatatttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 11150409  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150410 ctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 11150509  T
Q  220 atgaatgcatgaacaccaa 238  Q
    |||||||||||||||||||    
T  11150510 atgaatgcatgaacaccaa 11150528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 15703423 - 15703643
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 116  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||    
T  15703423 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatg 15703521  T
Q  117 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 216  Q
    || ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703522 tctctaactcgactctatatacatgtggtaccgattttagatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 15703621  T
Q  217 accatgaatgcatgaacaccaa 238  Q
    ||||||||||||||||||||||    
T  15703622 accatgaatgcatgaacaccaa 15703643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 25127503 - 25127291
Alignment:
Q  22 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 121  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||    
T  25127503 attgaatatcacatctttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctct 25127405  T
Q  122 aactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacca 220  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25127404 aactcgactcaatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaaatcggactgacca 25127305  T
Q  221 tgaatgcatgaaca 234  Q
    ||||||||||||||    
T  25127304 tgaatgcatgaaca 25127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 23972830 - 23973049
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||     
T  23972830 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaatcacacatcttc-aaatagacctacagttatgtatgcaatgtct 23972928  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23972929 ctaactcgactctatatgcatgtggtaccagttttggatatcagagttatgttactgaattatcccccatctttaaatcacatctttaaatcggactgac 23973028  T
Q  219 catgaatgcatgaacaccaaa 239  Q
    |||||||||||||||||||||    
T  23973029 catgaatgcatgaacaccaaa 23973049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 14644608 - 14644826
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  14644608 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 14644706  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 219  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14644707 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 14644806  T
Q  220 atgaatgcatgaacaccaaa 239  Q
    ||||||||||||||||||||    
T  14644807 atgaatgcatgaacaccaaa 14644826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 4529772 - 4529989
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 116  Q
    |||||||||||||||||||||||||||| ||||| || || || || || ||  ||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  4529772 acatcattgaatatcacatctttaaatagttacatatttttaaataacaaattatttaattacacatcttc-aaatagacttgtagttatgtatgcaatg 4529870  T
Q  117 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 216  Q
    || |||||||| |||||||||||||||||| |  ||||||||||||||  |||||||||||||||| ||||||||| || ||||| |||||||| |||||    
T  4529871 tctctaactcggctctatatgcatgtggtaacatttttggatatcagaggtatgttactgatttat-ccccatcttaaatcacatatttaaatcagactg 4529969  T
Q  217 accatgaatgcatgaacacc 236  Q
    |||||||||||||| |||||    
T  4529970 accatgaatgcatggacacc 4529989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 19613056 - 19612930
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 207  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||||||||| |||||||||||    
T  19613056 atgcaatgtccctaactcgactctatatgcatgtggtactggtttcggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaa 19612957  T
Q  208 atcggactgaccatgaatgcatgaaca 234  Q
    |||||||||||||||||||||||||||    
T  19612956 atcggactgaccatgaatgcatgaaca 19612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 18875038 - 18875161
Alignment:
Q  21 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 120  Q
    |||| |||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||    
T  18875038 cattaaatatctcatctttaaatagttacacatctttaaaaagaacatcttttaattacacatattc-atatagacttgcaattatgtatgcaatgtccc 18875136  T
Q  121 taactcgactctatatgcatgtggtacc 148  Q
    |||||||| ||||||  |||||||||||    
T  18875137 taactcga-tctata--catgtggtacc 18875161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 20770653 - 20770710
Alignment:
Q  97 ttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggtttt 154  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||    
T  20770653 ttgcagttatgtatgcgatgtacctaactcgactctatatgcatgtggtaccagtttt 20770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 12385382 - 12385288
Alignment:
Q  132 tatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaat 225  Q
    |||||||||||||||    |||||||| || || | ||||||| || |||||||||||||| ||| |||||||| ||||  ||||||||||||||    
T  12385382 tatatgcatgtggtattaattttggatgtctgagtaatgttaccgagttatcccccatcttcaaatcacatcttcaaatgtgactgaccatgaat 12385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 9565073 - 9565036
Alignment:
Q  198 acatctttaaatcggactgaccatgaatgcatgaacac 235  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  9565073 acatcgttaaataggactgaccatgaatgcatgaacac 9565036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 15691335 - 15691376
Alignment:
Q  108 gatgcaatgtcccta-actcgactctatatgcatgtggtacc 148  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  15691335 gatgcaatgtccctacactcgactatatatgcatgtggtacc 15691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 9609818 - 9609862
Alignment:
Q  104 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 148  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||    
T  9609818 tatgtatggaatgtacctaacttgactctatatgcatgtggtacc 9609862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 11509963 - 11509746
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||||     
T  11509963 tcattgaatatcacatctttaaataggtacacatcttaatatatcacatcttttaattacacatcttc-aaatagtcatacagttatgtatgcaatgtct 11509865  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11509864 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttattgatttatcccccatctttaaacacatctttaaatcggactgacc 11509765  T
Q  220 atgaatgcatgaacaccaa 238  Q
    |||||||||||||||||||    
T  11509764 atgaatgcatgaacaccaa 11509746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 18148951 - 18148734
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  18148951 tcattgaatatcacatctttaaatatgtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 18148853  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 219  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18148852 ctaactcgactctatatgcatgtggtaccggttttgaatatctgagttatgttactgatttatcccccatctttaaacacatctttaaatcagactgacc 18148753  T
Q  220 atgaatgcatgaacaccaa 238  Q
    |||||||||||||||||||    
T  18148752 atgaatgcatgaacaccaa 18148734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 22530338 - 22530124
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    ||||||||||| ||||||||||||| || ||||||||||| |||||| |||||||| ||||||||||| | |||||| | || ||||| ||||||||||     
T  22530338 tcattgaatattacatctttaaatagttgcacatcttaaaatatcacgtcttttaactacacatcttc-agatagacctacaattatgtatgcaatgtct 22530240  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  22530239 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccacatctttaaatcacatatttaaatcggactgac 22530140  T
Q  219 catgaatgcatgaaca 234  Q
    ||||||||| ||||||    
T  22530139 catgaatgcttgaaca 22530124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 34705766 - 34705977
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||| |||||||||||||||||| | ||||||| |||||| |||||||||||      |||||||||| |||||||| | |||||||| ||||||||||     
T  34705766 tcatcgaatatcacatctttaaacacttacacaacttaaaatatcacatctt------acacatcttc-aaatagacctacagttatgtatgcaatgtct 34705858  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 218  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  34705859 ctaactcaactctatctgcatgtggtaccggttttggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaaatcggactgac 34705958  T
Q  219 catgaatgcatgaacacca 237  Q
    |||||||||||||||||||    
T  34705959 catgaatgcatgaacacca 34705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 21860761 - 21860584
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 116  Q
    ||||||||||||||||| |||||||||| |||||||| || || ||  | |||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  21860761 acatcattgaatatcacgtctttaaatagttacacatatttaaatagtatatctttaaattacacatcttc-aaatagacttgcaattatgtatgcaatg 21860663  T
Q  117 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 196  Q
    |||||||||||||| |||||| ||||| |||   ||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21860662 tccctaactcgactatatatgaatgtgttactaattttggatatcagatgtatgttactga-ttatcccccatctttaaa 21860584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 13694170 - 13694274
Alignment:
Q  36 ctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctata 135  Q
    |||||||||| |||||||||| || |  ||| ||||||||| |||||||||| |||||||||||||  |||| |||||||||||||||||||| ||||||    
T  13694170 ctttaaataaatacacatctttaaatgacacgtcttttaatcacacatcttc-aaatagacttgcaaatatgtatgcaatgtccctaactcgattctata 13694268  T
Q  136 tgcatg 141  Q
    ||||||    
T  13694269 tgcatg 13694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 3377724 - 3377820
Alignment:
Q  90 aatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccgg-ttttggatatcagaattatgttactgatttatccc 185  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||| | |||||||| |||||||||||| | |||| ||| ||||| |||||    
T  3377724 aatacacttgcagatatgtatgcaatgtacctaactcgactctatacgcacgcggtaccggtttttggatatcatagttatattattgattaatccc 3377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 21501091 - 21501014
Alignment:
Q  120 ctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatttatcccccatctttaaa 196  Q
    |||| ||||||||||||||||||||||||  ||||| ||| || || ||||||||| |||| ||||  ||||||||||    
T  21501091 ctaattcgactctatatgcatgtggtaccaagttttagatgtcggagttatgttaccgattgatccttcatctttaaa 21501014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 6019331 - 6019275
Alignment:
Q  123 actcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatt 179  Q
    |||||| |||||||||||||||||||  |||||||| || || ||||||||| ||||    
T  6019331 actcgattctatatgcatgtggtaccatttttggatgtcggagttatgttaccgatt 6019275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 13386703 - 13386750
Alignment:
Q  126 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 174  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  13386703 cgactttatatgcttgtggtaccg-ttttggatatcagagttatgttac 13386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 19194024 - 19193977
Alignment:
Q  126 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 174  Q
    |||||||||| ||||||||||||  |||||||||||||| |||||||||    
T  19194024 cgactctatacgcatgtggtacca-ttttggatatcagagttatgttac 19193977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 21498551 - 21498603
Alignment:
Q  128 actctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 179  Q
    |||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||    
T  21498551 actctatatgcacgtggtaccaggttttagatgtcagagttatgttactgatt 21498603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 39437286 - 39437067
Alignment:
Q  19 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 118  Q
    |||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  39437286 atcattgaatatcgtatctttaaatagttacacattttaaaatatcacatcttttaattacacatcttc-aaatagacatgcagttatgtatgcaatgtc 39437188  T
Q  119 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgac 218  Q
     ||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39437187 tctaactcgactttatatgcatgtggtaccggttttggatattagagttatattactgatttatcccacatctttaaacacatctttaaatcggactgac 39437088  T
Q  219 catgaatgcatgaacaccaaa 239  Q
    |||||||||||||||||||||    
T  39437087 catgaatgcatgaacaccaaa 39437067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 29497130 - 29497057
Alignment:
Q  112 caatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatccc 185  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  29497130 caatgtcgctaactcgactatatatgcatgtggtaccagttttgtatatcagaggtatgttactgatttatccc 29497057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 27273153 - 27273200
Alignment:
Q  126 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 174  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||||    
T  27273153 cgactctatatgcatgtggtacc-gttttggatatcggagttatgttac 27273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 19049409 - 19049455
Alignment:
Q  126 cgactctatatgcatgtggtaccggttttggatatcagaattatgtta 173  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||    
T  19049409 cgactctatatgcatgtggtacc-gttttggatatcggagttatgtta 19049455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 140
Target Start/End: Original strand, 32039818 - 32039849
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcat 140  Q
    ||||||||||||||||||||||||||||||||    
T  32039818 atgcaatgtccctaactcgactctatatgcat 32039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 29497055 - 29497017
Alignment:
Q  200 atctttaaatcggactgaccatgaatgcatgaacaccaa 238  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  29497055 atctttaaattagactgaccatgaatgcatgaacaccaa 29497017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 889904 - 889872
Alignment:
Q  206 aaatcggactgaccatgaatgcatgaacaccaa 238  Q
    |||| ||||||||||||||||||||||||||||    
T  889904 aaataggactgaccatgaatgcatgaacaccaa 889872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 9882232 - 9882450
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    ||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9882232 tcattgaatatcacatctttaaacacttaaacatcttaaaatatcacatcatttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9882330  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9882331 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgattaatcccccatctttaaatcacatctttaaatcggactgac 9882430  T
Q  219 catgaatgcatgaacaccaa 238  Q
    ||||||||||||||||||||    
T  9882431 catgaatgcatgaacaccaa 9882450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 40387489 - 40387712
Alignment:
Q  11 agatggacatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggat 110  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||| ||    
T  40387489 agatgcacgtcattgaatatcacatctttaaatagttacacatcttaaattatcagatcttttaattacacatcttc-aaatagacctacagttatgtat 40387587  T
Q  111 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaat 209  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  40387588 gcaatgtttctaactcgactctatatgcatgtggtaccagttttggatattagagttatgttactgatttat-ccccatctttaaatcacatctttaaat 40387686  T
Q  210 cggactgaccatgaatgcatgaacac 235  Q
    |||||| |||||||||||||||||||    
T  40387687 cggacttaccatgaatgcatgaacac 40387712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 1216744 - 1216869
Alignment:
Q  114 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcgga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  1216744 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatcttattgatttatcccccatctttaaacacatgtttaaatcgga 1216843  T
Q  214 ctgaccatgaatgcatgaacaccaaa 239  Q
    || |||||||||||||||||||||||    
T  1216844 ctaaccatgaatgcatgaacaccaaa 1216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 42145381 - 42145554
Alignment:
Q  65 acatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 164  Q
    |||||||||||| |||||| ||| ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  42145381 acatcttttaatcacacatattc-aaatagatttgtagttatatatgcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcaaa 42145479  T
Q  165 attatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 238  Q
      ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||    
T  42145480 ggtatgttactgatttatctcccatctttaaatcacatcattaaatcggactgaccaagaatgcatgaacaccaa 42145554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 17289632 - 17289671
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtacc 148  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17289632 atgcaatgtccctaactcgactctatatgcatgtggtacc 17289671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 4860638 - 4860588
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatctttta 74  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||||||    
T  4860638 tcattgaatatcacatctttaaa----tacacatcttaaaatatcacatctttta 4860588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 42145299 - 42145378
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagact 97  Q
    ||||||| || |||||| |||||||||| |||||||||||  | || |||| |||||||| |||||||||| |||||||||    
T  42145299 acatcatcgagtatcacgtctttaaatatttacacatctttgaataacacaacttttaatcacacatcttc-aaatagact 42145378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 17289761 - 17289790
Alignment:
Q  212 gactgaccatgaatgcatgaacaccaaact 241  Q
    ||||||||||||||||||||||||||||||    
T  17289761 gactgaccatgaatgcatgaacaccaaact 17289790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 52272638 - 52272852
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||||||     
T  52272638 tcattgaatatcgcatctttaaatatttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagaactgcagttgtgtatgcaatgtct 52272736  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 219  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52272737 ctaactcgactctatatgcatgtggtatcggttttggatatcatagttatgttactgatttatcccacatctttaaacacatctttaaatcggactgacc 52272836  T
Q  220 atgaatgcatgaacac 235  Q
    ||||||||||||||||    
T  52272837 atgaatgcatgaacac 52272852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 64 - 235
Target Start/End: Original strand, 12785022 - 12785199
Alignment:
Q  64 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 163  Q
    |||||||||||||||||||||||| |||||||| | || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12785022 cacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 12785120  T
Q  164 aa-------ttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 235  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785121 atatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 12785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 41138127 - 41138001
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 208  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41138127 atgcaatgtccttaacttgactctatatgcatgtggtaccagttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaa 41138028  T
Q  209 tcggactgaccatgaatgcatgaacac 235  Q
    |||||||||||||||||||||||||||    
T  41138027 tcggactgaccatgaatgcatgaacac 41138001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 9132647 - 9132516
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  9132647 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcccccatctttaaatcacatctttaa 9132548  T
Q  208 atcggactgaccatgaatgcatgaacaccaaa 239  Q
    |||||||| || ||||||||||||||||||||    
T  9132547 atcggactaactatgaatgcatgaacaccaaa 9132516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 23633398 - 23633267
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23633398 atgcaatgtcactaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 23633299  T
Q  208 atcggactgaccatgaatgcatgaacaccaaa 239  Q
    |||||||||||||||||| |||||||| ||||    
T  23633298 atcggactgaccatgaattcatgaacatcaaa 23633267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 89878 - 89988
Alignment:
Q  37 tttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatat 136  Q
    ||||||||||||||  |||| || |  ||||| |||||||||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||||||    
T  89878 tttaaataattacatgtctttaaatcacacatgttttaattacacatcttc-aagtaaacttgcagtaatgtatgcaatgtccctaactcgactctatat 89976  T
Q  137 gcatgtggtacc 148  Q
    |||||| |||||    
T  89977 gcatgtagtacc 89988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 18515036 - 18514938
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatc-ttaaattat-cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaa 114  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||  | || ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  18515036 acatcattgaatatcacatctttaaataattacatgtctttacatcgtacatatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaa 18514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 18249972 - 18249887
Alignment:
Q  64 cacatcttttaattacacatcttcgaaatagacttgcagt--tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 148  Q
    ||||||||| ||||| |||||||  ||||||||||| |||  |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  18249972 cacatctttaaattaaacatctta-aaatagacttgtagtgttatgtatgtaatgtccttaactcgactctatatgcatgtggtacc 18249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 19474476 - 19474425
Alignment:
Q  113 aatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 164  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  19474476 aatgtccctaacttgactctatatgcatgtggtaccgtttttgaatatcaga 19474425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 18250004 - 18249965
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatctt 56  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  18250004 acatcaatgaatatcacatctttaaatagttacacatctt 18249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 19770312 - 19770139
Alignment:
Q  64 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 163  Q
    |||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19770312 cacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 19770214  T
Q  164 aattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 238  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770213 agttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 19770139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 19891695 - 19891910
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||| |||||||| | || ||||| ||||||||||     
T  19891695 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatctttaaattacacatcttc-aaatagacctacacttatgtatgcaatgtct 19891793  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||     
T  19891794 ctaactcgactctatatgcatgtggtaccggttttggatat--gagttatgttactgatttataccccatctttaaatacatctctaaattggactgact 19891891  T
Q  220 atgaatgcatgaacaccaa 238  Q
    | |||||||||||||||||    
T  19891892 acgaatgcatgaacaccaa 19891910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 9547622 - 9547840
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9547622 tcattgaatatcacatctttaaatagtcacacatcttgaaacatcacatcttataattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9547720  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 218  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  9547721 ctaactcgactctacatgcatgtggtaccggttttggatatcaaagttatgttactgatttat-ccccatctttaaatcacatctttaaatcgaactgac 9547819  T
Q  219 catgaatgcatgaacaccaaa 239  Q
    |||| ||||||| ||| ||||    
T  9547820 catgcatgcatgtacatcaaa 9547840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 22468810 - 22468952
Alignment:
Q  103 ttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa------ 196  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||   ||||||||||||||  | |||||||||||||| |||||||||||||          
T  22468810 ttatgtatgcaatgttcctaactcgactctatatgcatgtagtacatattttggatatcagaggtgtgttactgatttat-ccccatctttaaatcttaa 22468908  T
Q  197 --cacatctttaaatcggactgaccatgaatgcatgaacaccaa 238  Q
       |||||||||||||||| ||||||||||||||||||||||||    
T  22468909 attacatctttaaatcggattgaccatgaatgcatgaacaccaa 22468952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 12876176 - 12876106
Alignment:
Q  127 gactctatatgcatgtggtaccg-gttttggatatcagaattatgttactgatttatcccccatctttaaa 196  Q
    ||||||||||| ||||||||||  ||||||||| ||||| ||||||||| || | ||||||||||||||||    
T  12876176 gactctatatgtatgtggtaccatgttttggatgtcagagttatgttaccgagtaatcccccatctttaaa 12876106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 19565316 - 19565277
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtacc 148  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  19565316 atgcaatgtctctaactcgaatctatatgcatgtggtacc 19565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 20738985 - 20738946
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtacc 148  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  20738985 atgcaatgtgcctaactcggctctatatgcatgtggtacc 20738946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 22468752 - 22468806
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatctt 71  Q
    ||||||||||||| |||||||| ||||| ||||||||||| || || ||||||||    
T  22468752 acatcattgaataacacatcttaaaatagttacacatctttaaataacacatctt 22468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 17729507 - 17729544
Alignment:
Q  125 tcgactctatatgcatgtggtaccggttttggatatca 162  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  17729507 tcgactatatatgcatgtggtaccgtttttggatatca 17729544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 19565200 - 19565160
Alignment:
Q  198 acatctttaaatcggactgaccatgaatgcatgaacaccaa 238  Q
    ||||| |||||| ||||||| ||||||||||||||||||||    
T  19565200 acatcgttaaataggactgagcatgaatgcatgaacaccaa 19565160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 172684 - 172466
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  172684 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 172586  T
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 219  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172585 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 172486  T
Q  220 atgaatgcatgaacaccaaa 239  Q
    ||||||||||||||||||||    
T  172485 atgaatgcatgaacaccaaa 172466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 233
Target Start/End: Original strand, 106674 - 106885
Alignment:
Q  21 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 120  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |    
T  106674 cattgaatatcacatcttaaaataattacacttcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctc 106772  T
Q  121 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||||||| |||||||||||||| | |||||     
T  106773 taactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttat-tcccgtctttaaatcacatctttaaatcagtctgact 106871  T
Q  220 atgaatgcatgaac 233  Q
    ||||||||||||||    
T  106872 atgaatgcatgaac 106885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 15300 - 15437
Alignment:
Q  102 gttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacat 201  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15300 gttatgtaagcaatgtctctaactcgactctatatgcatgtagtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacat 15399  T
Q  202 ctttaaatcggactgaccatgaatgcatgaacaccaaa 239  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15400 ctttaaatcggactgaccatgaatgcatgaacatcaaa 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 16092412 - 16092543
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 207  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16092412 atgcaatgtccctaactcgactatatatgtatgtggtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 16092511  T
Q  208 atcggactgaccatgaatgcatgaacaccaaa 239  Q
    |||||||||| |||||||||||||||||||||    
T  16092512 atcggactgatcatgaatgcatgaacaccaaa 16092543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 20264813 - 20264687
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 208  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  20264813 atgcaatgtccctaactcgactctatatgcatgtggtacttgttttgaacatcagagttatgttactgatttatcccccagctttaaacacatctttaaa 20264714  T
Q  209 tcggactgaccatgaatgcatgaacac 235  Q
    |||||||||||||||||||||||||||    
T  20264713 tcggactgaccatgaatgcatgaacac 20264687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 32625671 - 32625541
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatctt-aaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaat 115  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  32625671 acataattgaatatcacatctttaaataattacacgtctttaaatta-cacatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaat 32625574  T
Q  116 gtccctaactcgactctatatgcatgtggtacc 148  Q
    |||||||||||||||||||||||||||||||||    
T  32625573 gtccctaactcgactctatatgcatgtggtacc 32625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 34892182 - 34892295
Alignment:
Q  25 gaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaac 124  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |||||    
T  34892182 gaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaac 34892280  T
Q  125 tcgactctatatgca 139  Q
    |||||||||||||||    
T  34892281 tcgactctatatgca 34892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 38991701 - 38991788
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  38991701 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcctccatctttaaa 38991788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 27401814 - 27401699
Alignment:
Q  121 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 219  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||  |||| | ||||| ||| ||||||||||||| ||||||||||||||||||||| |    
T  27401814 taactcgactctatatgcttgtgataccgattttggatatcagaggtatgctcctgatgtattccccatctttaaatcacatctttaaatcggactgatc 27401715  T
Q  220 atgaatgcatgaacac 235  Q
    |||||| |||||||||    
T  27401714 atgaatacatgaacac 27401699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 20178635 - 20178711
Alignment:
Q  64 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatg 141  Q
    ||||||||||||| |||||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  20178635 cacatcttttaatcacacatcttc-aaattgacatgcaattatgtatgcaatgtccctaactcgactctatatgcatg 20178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 196
Target Start/End: Original strand, 22385814 - 22385899
Alignment:
Q  109 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 196  Q
    |||||||||  | ||||||||||||||  |||||| |||||||| |||||||||||  |||||||||||||||||| |||||||||||    
T  22385814 atgcaatgtttcaaactcgactctata--catgtgataccggttatggatatcagaggtatgttactgatttatcctccatctttaaa 22385899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 30613327 - 30613270
Alignment:
Q  120 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactga 177  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||  |||||| ||||    
T  30613327 ctaactcgactttatatgcatgtggtaccttttttggatatcagaggtatgtttctga 30613270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 29890519 - 29890563
Alignment:
Q  119 cctaactcgactctatatgcatgtggtacc-ggttttggatatca 162  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  29890519 cctaactcgactctatatgcatgtggtaccaggttttagatatca 29890563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 16092227 - 16092297
Alignment:
Q  17 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 87  Q
    |||||||| ||||||||||||| ||||| |||||| | || || || ||||||| |||||| |||||||||    
T  16092227 acatcattaaatatcacatcttaaaatagttacactttttcaaataacacatctattaattccacatcttc 16092297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 19467160 - 19467084
Alignment:
Q  104 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 179  Q
    |||| ||||||||| |||||||| ||| || ||||||||||||||   ||||||||||||||  |||| ||||||||    
T  19467160 tatgtatgcaatgtacctaactcaactgtacatgcatgtggtaccaatttttggatatcagaggtatggtactgatt 19467084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 12012 - 12139
Alignment:
Q  20 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 119  Q
    |||||||||  |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  12012 tcattgaatgacacatccttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 12110  T
Q  120 ctaactcgactctatatgcatgtggtacc 148  Q
    |||||||||||||||||||||||||||||    
T  12111 ctaactcgactctatatgcatgtggtacc 12139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 9784 - 9875
Alignment:
Q  144 gtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaaca 234  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||    
T  9784 gtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcatatctttagatcggaccgaccatgaatgcatgaaca 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 429 - 344
Alignment:
Q  154 tggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 238  Q
    ||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||| || |||||    
T  429 tggatatcaaagttatgttactgatttatcctccatctttaaatcacatctttaaatatgactgaccatgaatgcattaaaaccaa 344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 221835 - 221894
Alignment:
Q  89 aaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 148  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  221835 aaatatacttgcagttatgtatgcaatgtcactaactcgactctatatgcatgtggtacc 221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 66752 - 66678
Alignment:
Q  109 atgcaatgtccctaactcgactctatatg--catgtggtaccggttttggatatcagaattatgttactgattta 181  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||  ||||||  |||||||    
T  66752 atgcaatgtccctaactcgactctatatgcacatgtcgtaccggttttggatatcagaggtatgttgttgattta 66678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 67021 - 66953
Alignment:
Q  19 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 87  Q
    |||||||||||||||||||| ||||| |||||  |||| || || |||||| |||||||| ||| ||||    
T  67021 atcattgaatatcacatcttaaaatagttacatttctttaaataacacatcctttaattaaacagcttc 66953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 22871 - 22899
Alignment:
Q  120 ctaactcgactctatatgcatgtggtacc 148  Q
    |||||||||||||||||||||||||||||    
T  22871 ctaactcgactctatatgcatgtggtacc 22899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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