View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_277 (Length: 247)
Name: NF10261A_low_277
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_277 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 54793816 - 54793599
Alignment:
| Q |
19 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgttgaattttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54793816 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54793717 |
T |
|
| Q |
119 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
54793716 |
cacattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaacaaatcttttcttgcagacttgcacaaaaaccttctca |
54793617 |
T |
|
| Q |
219 |
tcaaggtctcccattctt |
236 |
Q |
| |
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|||||||||||||||||| |
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| T |
54793616 |
tcaaggtctcccattctt |
54793599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 52286496 - 52286280
Alignment:
| Q |
20 |
gcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgttgaatttttc |
119 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||| | |||||| ||| |
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| T |
52286496 |
gcataactactgcaaaaacacagagcatgtctttatggtacataccacatggctatcattctctctgacgactttaaaagggtgccaagctgaattcttc |
52286397 |
T |
|
| Q |
120 |
acattctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcat |
219 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||| || |
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| T |
52286396 |
acattctcctgccaaaaagagcaaagctccatggccttcatcccagcttcttcttcagaaagaaatcttttcttgcagacattcacaaaaactttctgat |
52286297 |
T |
|
| Q |
220 |
caaggtctcccattctt |
236 |
Q |
| |
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||||||||||||||||| |
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|
| T |
52286296 |
caaggtctcccattctt |
52286280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 54775823 - 54775932
Alignment:
| Q |
19 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgttgaattttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
54775823 |
agcatagctacttcaaaaacacagagcatgtctttatggtacatacctcatgggtatcattcactctgaccactttaaaagggtgccatgctgaattttt |
54775922 |
T |
|
| Q |
119 |
cacattctcc |
128 |
Q |
| |
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||||| |||| |
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|
| T |
54775923 |
cacatgctcc |
54775932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 801656 - 801450
Alignment:
| Q |
23 |
tagctacttcaaaaacacagagcatgtctttatggtacatacctcatgtgtatcattcactctgaccactttaaaagggtgccatgttgaatttttcaca |
122 |
Q |
| |
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|||| ||| ||||||||||||||||| ||||| |||||||||| | | |||||||| ||||||||||||||||||||||| | ||| || |||||| |
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| T |
801656 |
tagccactccaaaaacacagagcatggctttagggtacataccacggggttatcattctgactgaccactttaaaagggtgccaagctgagttcttcaca |
801557 |
T |
|
| Q |
123 |
ttctcctgccaaacagagcaaagctccatggccttcatcccagcttcttcttgagaaagaaatcttttcttgcagacttgcacaaaaaccttctcatcaa |
222 |
Q |
| |
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|| |||||||| | |||||||||||| | |||||| ||||||||||| || |||| |||||||||||||||| | | |||||||||||||| |||| |
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| T |
801556 |
ttttcctgccataaagagcaaagctcaacggcctttatcccagcttcatc---agaagaaaatcttttcttgcaggcattcacaaaaaccttctggtcaa |
801460 |
T |
|
| Q |
223 |
ggtctcccat |
232 |
Q |
| |
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|||||||||| |
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|
| T |
801459 |
ggtctcccat |
801450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 54775950 - 54775982
Alignment:
| Q |
204 |
acaaaaaccttctcatcaaggtctcccattctt |
236 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
54775950 |
acaaaaaccttctcatcaaggtctcccattctt |
54775982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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