View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_28 (Length: 427)
Name: NF10261A_low_28
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 44826925 - 44826518
Alignment:
| Q |
20 |
catcaaagtcaaggtcgatgtcaagaaagagcaaatctaagaagttcaaatattcttcaaaatcttgtggacttccatccaaatggaaaagaagaagaaa |
119 |
Q |
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| T |
44826925 |
catcaaagtcaaggtcgatgtcaagaaagagcaaatctaagaagttcaaatattcttcaaaatcttgtggacttccatccaaatggaaaagaagaagaaa |
44826826 |
T |
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| Q |
120 |
taccgatgagaaaaacaaactggaaaagcactatacaccttgtgaatgtgagggggcgtgtggaaagcaatgtacatgtcgtcttaatggttattgctgt |
219 |
Q |
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| T |
44826825 |
taccgatgagaaaaacaaactggaaaagcactatacaccttgtgaatgtgagggggcgtgtggaaagcaatgtccatgtcgtcttaatggtttttgctgt |
44826726 |
T |
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| Q |
220 |
gaaaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatcagttatattttctaccttcag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44826725 |
gaaaaatattgtgggtatgtcaattttcatttaattatgttacttttcgatggaaaacaactatgttttcaatgtgatcagttatattttttaccttcag |
44826626 |
T |
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| Q |
320 |
gtgttcaaagctctgtaaaaatctatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgttttgcagcttcaagagattgt |
419 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44826625 |
gtgttcaaagctctgtaaaaatcgatttggaggatgtcagtgtactaagagtcagtgtagaagtcgacactgtccatgttttgcagcttcaagagattgt |
44826526 |
T |
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| Q |
420 |
gaccctga |
427 |
Q |
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| T |
44826525 |
gaccctga |
44826518 |
T |
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