View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_280 (Length: 246)
Name: NF10261A_low_280
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_280 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 24666844 - 24666621
Alignment:
| Q |
16 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
115 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24666844 |
ataccgtttgattgaatcaatggttgagatttattgaaaataagattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat |
24666745 |
T |
|
| Q |
116 |
ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
215 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24666744 |
ctttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagga |
24666645 |
T |
|
| Q |
216 |
accaatttcttggtgttgataact |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24666644 |
accaatttcttggtgttgataact |
24666621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 34941551 - 34941782
Alignment:
| Q |
9 |
gaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatt |
108 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| ||||||||| |||||||| |||||||||| ||||||||||||||| |||||||||||| |||||| |
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| T |
34941551 |
gaagaaaataccgtttgattgaatcaacggttgagatttattgaaaataaagttgagaacatctagacattttaacatacaatcttgtccctgttatatc |
34941650 |
T |
|
| Q |
109 |
tcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagt |
208 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
34941651 |
tcttcatcctcttcaactcccctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaaat |
34941750 |
T |
|
| Q |
209 |
gacaggaa-ccaatttcttggtgttgataact |
239 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
34941751 |
gacaggaacccaatttcttggtgttgataact |
34941782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 18363653 - 18363426
Alignment:
| Q |
8 |
cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat |
107 |
Q |
| |
|
||||||| ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
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|
| T |
18363653 |
cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat |
18363554 |
T |
|
| Q |
108 |
ttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
207 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18363553 |
ttcttcatcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
18363458 |
T |
|
| Q |
208 |
tgacaggaaccaatttcttggtgttgataact |
239 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
18363457 |
tgacatgaaccaatttcttggtgttgataact |
18363426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 36599275 - 36599502
Alignment:
| Q |
8 |
cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatat |
107 |
Q |
| |
|
||||||| ||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |
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|
| T |
36599275 |
cgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattgagaacatctagacattttaacatacattcttgtccctattatat |
36599374 |
T |
|
| Q |
108 |
ttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
207 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36599375 |
ttcttcatcctt--caactcccctgaaatctgtaaatctagaatacgc--gcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaag |
36599470 |
T |
|
| Q |
208 |
tgacaggaaccaatttcttggtgttgataact |
239 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
36599471 |
tgacatgaaccaatttcttggtgttgataact |
36599502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 8752390 - 8752465
Alignment:
| Q |
117 |
cttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa |
192 |
Q |
| |
|
|||||||||||||||||||| || |||| | | | ||||||| ||||||||||||||| ||| |||||||||||| |
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|
| T |
8752390 |
cttttcaactcctctgaaattagtgaatccataggttgcttgctgaaaacatctacatcaattcgaaaatgaaaaa |
8752465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 26240735 - 26240615
Alignment:
| Q |
120 |
ttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacaggaa-cc |
218 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
26240735 |
ttcaactcccttgaaatatgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaaccagatatgggaaagtgacagaaaccc |
26240636 |
T |
|
| Q |
219 |
aatttcttggtgttgataact |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
26240635 |
aatttcttggtgttgataact |
26240615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 26240870 - 26240779
Alignment:
| Q |
9 |
gaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
26240870 |
gaagaaaataccgtttgattgaatcaatggttgagatttattgaaaataatattgagaacatctagacattttaacatacaatcttgtccct |
26240779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 53242714 - 53242900
Alignment:
| Q |
8 |
cgaagaatataccgtttgattgaatcaatggtttagatttattaaaaataaaatt-gagaacatatagacattttaacattaaatcttgt-ccctattat |
105 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||||| || | ||| |||| ||||||||| |
|
|
| T |
53242714 |
cgaagaaaataccatttgattgaatcaatggttaagatttattgaaaataaaatttgagaacatctagacattttcacttacaattttgttccctattat |
53242813 |
T |
|
| Q |
106 |
atttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatttgaaaatgaaaaa |
192 |
Q |
| |
|
|||| |||||||| |||||||| | ||||||||||||||| ||||| | ||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
53242814 |
atttgttcatcctcttcaactctcttaaaatctgtaaatctaaaagatacatgcagaaaacatctatatccattcggaaatgaaaaa |
53242900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 215
Target Start/End: Complemental strand, 43479456 - 43479315
Alignment:
| Q |
64 |
agaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaa |
163 |
Q |
| |
|
||||||| |||||||||| |||| ||| |||| ||||||||||||||||||| | |||||||| | ||||||||||||||||||||||| |
|
|
| T |
43479456 |
agaacatctagacattttcacatacaatattgttcctattatatttcttcatcttattcaactctt-----------aaatctagaagatgcttgcagaa |
43479368 |
T |
|
| Q |
164 |
aacatctacatccatttg-aaaatgaaaaaccagatatgggaaagtgacagga |
215 |
Q |
| |
|
|||||||||||||||| | ||||||||||| |||| | || ||||||| |||| |
|
|
| T |
43479367 |
aacatctacatccattcgaaaaatgaaaaaacagagacggaaaagtgatagga |
43479315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 19697413 - 19697568
Alignment:
| Q |
16 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcat |
115 |
Q |
| |
|
|||| ||||||||||||||||| || |||||| || |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19697413 |
atactgtttgattgaatcaatgtttgagattttttgaaaa-aaaattgagaacatctagacattttaacatacaatcttgtccctattatatttcttcat |
19697511 |
T |
|
| Q |
116 |
ccttttcaactcctctgaaatctgtaaatctagaagatgcttgcagaaaacatctacatccatt |
179 |
Q |
| |
|
| ||||||||||| || | |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
19697512 |
cattttcaactccactaa-------aaatttagaagatgcttgcggaaaacatctacatccatt |
19697568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13265597 - 13265651
Alignment:
| Q |
16 |
ataccgtttgattgaatcaatggtttagatttattaaaaataaaattgagaacat |
70 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
13265597 |
ataccgttggattaaatcaatggtttagaattattaaaaataaaaatgagaacat |
13265651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 32566563 - 32566462
Alignment:
| Q |
25 |
gattgaatcaatggtttagatttattaaaaataaaattgagaacatatagacattttaacattaaatcttgtccctattatatttcttcatccttttcaa |
124 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| ||||||||||||| || ||||||| |||| |||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
32566563 |
gattgattcaatggtcaagatttattgaaaa--aaattgagaacatctaaacattttcacatacaatcttgtccctattatatttc-tcatcttattcaa |
32566467 |
T |
|
| Q |
125 |
ctcct |
129 |
Q |
| |
|
||||| |
|
|
| T |
32566466 |
ctcct |
32566462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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