View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10261A_low_282 (Length: 246)
Name: NF10261A_low_282
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_282 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 35361000 - 35360764
Alignment:
| Q |
1 |
atcgataaattgcgtttgagaccttcttacaaaataaaattaacaaatgcatattttaagtagtaatttcaagacattttgaaaattgaaacattataca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35361000 |
atcgataaattgcgtttgagaccttcttacaaaataaaattaacaa-tgcatattttaagtagtaatttcaacacattttgaaaattgaaacattataca |
35360902 |
T |
|
| Q |
101 |
tggaaaatgtttagattagaaactttggtgaaaatttgccttgtattcatgcaaaacaaacgtcgtcaaagttgaggaatgtatatcgataatgtaaacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35360901 |
tggaaaatgtttagattagaaactttggtgaaaatttgccttgtattcatgcaaaacaaacttcgtcaaagttgaggaatgtatatcgataatgtaaacc |
35360802 |
T |
|
| Q |
201 |
catttgtcacaattggttaatttgtgagaatattcttc |
238 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35360801 |
catttgtcacacttggttaatttgtgagaatattcttc |
35360764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 35373194 - 35373133
Alignment:
| Q |
177 |
gaatgtatatcgataatgtaaacccatttgtcacaattggttaatttgtgagaatattcttc |
238 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
35373194 |
gaatgtatatcaataatgtaaacccatttgtcacacttggttaatttgtgaggatattcttc |
35373133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University