View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_286 (Length: 245)
Name: NF10261A_low_286
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_286 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 87592 - 87814
Alignment:
| Q |
1 |
aatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtgt |
100 |
Q |
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||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
87592 |
aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt |
87691 |
T |
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| Q |
101 |
ctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaac |
200 |
Q |
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| T |
87692 |
ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaac |
87791 |
T |
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| Q |
201 |
gctttttcctcgtttggactatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
87792 |
gctttttcctcgtttggactatt |
87814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 95608 - 95830
Alignment:
| Q |
1 |
aatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtgt |
100 |
Q |
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| T |
95608 |
aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt |
95707 |
T |
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| Q |
101 |
ctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaac |
200 |
Q |
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| T |
95708 |
ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaat |
95807 |
T |
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| Q |
201 |
gctttttcctcgtttggactatt |
223 |
Q |
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| T |
95808 |
gatttttcctcgtatggactatt |
95830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40878691 - 40878469
Alignment:
| Q |
1 |
aatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtgt |
100 |
Q |
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||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
40878691 |
aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt |
40878592 |
T |
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| Q |
101 |
ctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaac |
200 |
Q |
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| T |
40878591 |
ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaac |
40878492 |
T |
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| Q |
201 |
gctttttcctcgtttggactatt |
223 |
Q |
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| T |
40878491 |
gctttttcctcgtttggactatt |
40878469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40870674 - 40870452
Alignment:
| Q |
1 |
aatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagttttgataatgacggtgttgctggcaccaacgtgt |
100 |
Q |
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||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
40870674 |
aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt |
40870575 |
T |
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| Q |
101 |
ctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaac |
200 |
Q |
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| T |
40870574 |
ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaat |
40870475 |
T |
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| Q |
201 |
gctttttcctcgtttggactatt |
223 |
Q |
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| T |
40870474 |
gatttttcctcgtatggactatt |
40870452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
123 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcg |
212 |
Q |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
139 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttgga |
218 |
Q |
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| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 42730140 - 42730239
Alignment:
| Q |
124 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggactatt |
223 |
Q |
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|||||||| || || || |||||||||||||||||||| ||||| || |||||| ||||||||| ||||| || || |||||||| | ||||| |||| |
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| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgctgagactatttttcctaggttggattatt |
42730239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
123 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
177 |
Q |
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||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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