View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10261A_low_288 (Length: 245)
Name: NF10261A_low_288
Description: NF10261A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10261A_low_288 |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: scaffold1075 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2768 - 2537
Alignment:
| Q |
1 |
gaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttga |
100 |
Q |
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| T |
2768 |
gaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttga |
2669 |
T |
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| Q |
101 |
ctggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctct |
200 |
Q |
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| T |
2668 |
ctggtaaaagtaagagggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctct |
2569 |
T |
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| Q |
201 |
taagttgaaaggaacgttgaagagtcatgatg |
232 |
Q |
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| T |
2568 |
taagttgaaaggaacgttgaagagtcatgatg |
2537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 17006329 - 17006560
Alignment:
| Q |
1 |
gaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttga |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17006329 |
gaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttga |
17006428 |
T |
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| Q |
101 |
ctggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctct |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17006429 |
ctggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcattgacttggaagctct |
17006528 |
T |
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| Q |
201 |
taagttgaaaggaacgttgaagagtcatgatg |
232 |
Q |
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| T |
17006529 |
taagttgaaaggaatgttgaagagtcatgatg |
17006560 |
T |
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